Embedded Files
Research articles
2025
77. Fujiwara, K., A. C. Gill, H. Endo, K. Shibukawa and H. Motomura. 2025 (Sept.). Taxonomic review of the dottyback genus Pseudoplesiops in Japanese waters, with descriptions of two new species (Pseudochromidae: Pseudoplesiopinae). Ichthyological Research, doi: 10.1007/s10228-025-01036-9 (22 pages; 10 Sept. 2025)
76. Motomura, H., H. Wada, M. Aizawa, K. Fujiwara, D. Oyama, K. Sakamoto and R. Ueshima. 2025 (July). List of specimens of the family Polynemidae (Actinopterygii: Perciformes) deposited in the Department of Zoology, the University Museum, the University of Tokyo. The University Museum, the University of Tokyo, Material Reports, No. 139: 93–98. 査読なし non-peer reviewed
75. Matsunuma, M., H. Motomura, H. Wada, M. Aizawa, K. Fujiwara, D. Oyama, K. Sakamoto and R. Ueshima. 2025 (July). List of specimens of the families Neosebastidae and Scorpaenidae (Actinopterygii: Perciformes) deposited in the Department of Zoology, the University Museum, the University of Tokyo. The University Museum, the University of Tokyo, Material Reports, No. 139: 47–64. 査読なし non-peer reviewed
74. Fujiwara, K., H. Wada and R. Ueshima. 2025 (July). Catalogue of fish collection deposited in the Department of Zoology, The University Museum, The University of Tokyo Vol. 4. The University Museum, The University of Tokyo Material Reports, No. 139: 1–200. 査読なし non-peer reviewed
2024
73. 尾山大知・藍澤正宏・藤原恭司 ．2024 (Nov.)．西表島から得られた標本に基づく北半球初記録のハゼ科魚類Egglestonichthys rubidusコクトウハゼ（新称）．Ichthy, Natural History of Fishes of Japan, 49: 25–30. Doi: 10.34583/ichthy.49.0_25．English title: First specimen-based Northern Hemisphere records of Egglestonichthys rubidus (Gobiidae) from Iriomote Island, Yaeyama Islands, Ryukyu Archipelago, Japan.
72. Fujiwara, K., H. Motomura, A. P. Summers and K. W. Conway. 2024 (Mar.). A new generic name for the “Lepadichthys” lineatus complex with a rediagnosis of Discotrema, a senior synonym of Unguitrema, and comments on their phylogenetic relationships (Gobiesocidae: Diademichthyinae). Vertebrate Zoology, 74: 279–301. Doi: 10.3897/vz.74.e113955
71. Fujiwara, K., H. Wada, M. Aizawa, K. Sakamoto and R. Ueshima. 2024 (Feb.). Specimens of the family Gobiesocidae (Teleostei: Gobiesociformes) deposited in the Department of Zoology, The University Museum, The University of Tokyo. The University Museum, The University of Tokyo Material Reports, No. 132: 191–196. 査読なし non-peer reviewed
70. Fujiwara, K. and Y. Ikeda. 2024 (Feb.). Description of a new species of Opistognathus (Perciformes: Opistognathidae) from the southern Japan Sea. Ichthyological Research, doi: 10.1007/s10228-024-00951-7 (8 pages; 27 Feb. 2024)
2023
69. Fujiwara, K., G. Shinohara and H. Motomura. 2023 (Nov.). Rediagnosis of Lissonanchus Smith 1966, a senior synonym of Briggsia Craig and Randall 2009 (Gobiesocidae), with notes on included species and their osteological characters. Ichthyological Research, doi: 10.1007/s10228-023-00938-w (13 pages; 18 Nov. 2023), 71 (3): 353–365 (11 July 2024)
68. Fujiwara, K., H. Motomura and G. Shinohara. 2023 (Sept.). Opistognathus ctenion (Perciformes, Opistognathidae): a new jawfish from southern Japan. ZooKeys, 1179: 353–364. Doi: 10.3897/zookeys.1179.109813
67. 藤原恭司・和田英敏．2023 (Apr.)．ウバウオ科ヨザクラウバウオ属の 2 種（ヨザクラウバウオと ヨウコウヨザクラウバウオ）の南西諸島と東シナ海南部からの追加標本．Ichthy, Natural History of Fishes of Japan, 35: 5–9. Doi: 10.34583/ichthy.35.0_5．English title: Additional specimens of two deepwater gobiesocids, Kopua minima and Kopua yoko from the Nansei Islands and the southern East China Sea, Japan.
66. 古橋龍星・藤原恭司・本村浩之．2023 (Apr.)．鹿児島湾から得られた九州沿岸初記録のアゴアマダイ科魚類Opistognathus flavidusバナナアゴアマダイ（新称）．Ichthy, Natural History of Fishes of Japan, 31: 19–23. Doi: 10.34583/ichthy.31.0_19．English title: First Kyushu record of Opistognathus flavidus (Opistognathidae) from Kagoshima Bay, Japan.
2022
65. Fujiwara, K. and K. Shibukawa. 2022 (Dec.). Description of a new species of Obliquogobius (Gobiidae: Gobiinae) from the East China Sea off the Ryukyu Islands, southern Japan. Ichthyological Research, doi: 10.1007/s10228-022-00901-1 (8 pages; 28 Dec. 2022), 70 (4): 431–438 (4 Nov 2023)
64. 星野和夫・藤原恭司．2022 (Dec.)．大分県初記録のヒメウバウオ．Ichthy, Natural History of Fishes of Japan, 27: 4–6. Doi: 10.34583/ichthy.27.0_4．English title: First records of Propherallodus briggsi (Perciformes: Gobiesocidae) from Oita Prefecture, Kyushu, southern Japan.
63. Fujiwara, K., T. Suzuki and H. Motomura. 2022 (Nov.). First Japanese record of the rare goby Trimma panemorfum Winterbottom and Pyle, 2022 from Okinawa Island, Ryukyu Islands, Southern Japan. Bulletin of the National Museum of Nature and Science Series A (Zoology), 48 (4): 229–233. Doi: 10.50826/bnmnszool.48.4_229
62. Fujiwara, K. and G. Shinohara. 2022 (Oct.). Description of a new species of Acanthoplesiops (Plesiopidae: Acanthoclininae) from the Kerama Islands, Ryukyu Islands, southern Japan. Ichthyological Research, doi: 10.1007/s10228-022-00896-9 (6 pages; 27 Oct. 2022), 70 (3): 353–358 (27 June 2023)
61. 藤原恭司・笹木大地・本村浩之．2022 (Oct.)．奄美群島喜界島から得られた薩南諸島初記録および北限記録のトウゴロウイワシ科トガリイソイワシ．Ichthy, Natural History of Fishes of Japan, 25: 1–3. Doi: 10.34583/ichthy.25.0_1．English title: First Satsunan Islands and northernmost records of Hypoatherina panatela collected from Kikai-jima island, Amami Islands, Kagoshima Prefecture, southern Japan.
60. 藤原恭司・ジョン ビョル・伊東正英・本村浩之．2022 (Apr.)．大隅諸島黒島初記録の魚類3種および同島からこれまでに確認されている魚類の総種数．Ichthy, Natural History of Fishes of Japan, 19: 19–21. Doi: 10.34583/ichthy.19.0_19．English title: First records of three fish species from Kuro-shima island in the Osumi Islands, Kagoshima, Japan, and a review of fish species’ numbers recorded from the island.
59. Fujiwara, K., P. N. Psomadakis, T. Y. Y. Swe and H. Motomura. 2022 (Mar.). First records of the two gobies, Cryptocentrus shigensis and Priolepis profunda (Actinopterygii: Gobiiformes: Gobiidae), from the Andaman Sea. Acta Ichthyologica et Piscatoria, 52 (1): 21–27. Doi: 10.3897/aiep.52.71241
58. 藤原恭司・ジョン ビョル・松岡 翠・本村浩之．2022 (Feb.)．奄美群島喜界島から得られた初記録の魚類28種および同島から確認された魚類の総種数．Ichthy, Natural History of Fishes of Japan, 17: 88–94. Doi: 10.34583/ichthy.17.0_88．English title: First records of 28 fish species from Kikai Island in the Amami Islands, Kagoshima, Japan, and a review of the total number of fish species recorded from the island.
57. Fujiwara, K., K. W. Conway, A. P. Summers and H. Motomura. 2022 (Jan.). Rediagnosis of the monotypic genus Lepadicyathus Prokofiev 2005 (Gobiesocidae: Diademichthyinae) and redescription of Lepadicyathus minor (Briggs 1955), new combination. Ichthyological Research, doi: 10.1007/s10228-021-00851-0 (16 pages; 22 Jan. 2022), 69 (4): 489–504 (4 Nov. 2022)
2021
56. Fujiwara, K., P. N. Psomadakis, T. Y. Y. Swe and H. Motomura. 2021 (Dec.). Description of a new species of Obliquogobius (Teleostei: Gobiidae) from the Andaman Sea (northeastern Indian Ocean). Raffles Bulletin of Zoology, 69: 541–547. Doi: 10.26107/RBZ-2021-0070
55. Fujiwara, K. and K. W. Conway. 2021 (Nov.). A replacement name for the acoelan flatworm genus Rimicola Böhmig (Acoela: Isodiametridae). Zootaxa, 5068 (1) (Correspondence): 149–150. Doi: 10.11646/zootaxa.5068.1.9
54. Fujiwara, K. and H. Motomura. 2021 (Oct.). Review of the Lepadichthys lineatus complex (Gobiesocidae: Diademichthyinae) with descriptions of three new species. Journal of Fish Biology, doi: 10.1111/jfb.14919 (21 Oct. 2021), 100 (1): 62–81 (20 Jan. 2022)
53. Conway, K. W., K. Fujiwara, H. Motomura and A. P. Summers. 2021 (Oct.). Erdmannichthys, a new genus of Gobiesocidae (Teleostei: Gobiesociformes), and notes on the rare clingfish E. alorensis (Allen & Erdmann, 2012), new combination. Raffles Bulletin of Zoology, 69: 428–437. Doi: 10.26107/RBZ-2021-0062
52. 赤池貴大・藤原恭司・上原航知・松岡 翠・藤井琢磨・ジョン ビョル・松本達也・中川龍一・緒方僚輝・是枝伶旺・古橋龍星・望月健太郎・飯野友香・出羽優凪・石原祥太郎・本村浩之．2021 (Oct.)．標本に基づく琉球列島初記録を含む沖永良部島初記録の魚類66種，およびサザンプラティフィッシュの島内における新産地とカワアナゴ属の一種の形態学的特徴．Ichthy, Natural History of Fishes of Japan, 13: 18–35. Doi: 10.34583/ichthy.13.0_18．English title: First specimen-based records of 66 fish species from Okinoerabu Island, Amami Islands, Kagoshima, Japan, with a new locality of Xiphophorus maculatus on the island and morphological notes on Eleotris sp.
51. Fujiwara, K., T. Suzuki and H. Motomura. 2021 (Oct.). Callogobius falx, a new species of goby from southern Japan. Zootaxa, 5048 (2): 253–264. Doi: 10.11646/zootaxa.5048.2.6
50. Fujiwara, K., K. W. Conway and H. Motomura. 2021 (Sept.). Description of a new genus and two new species of Indo-Pacific clingfishes (Gobiesocidae: Diademichthyinae) with redescription and reassignment of two species previously assigned to Lepadichthys Waite, 1904. Ichthyology & Herpetology, 109 (3): 753–784. Doi: 10.1643/i2020132
49. Fujiwara, K., K. W. Conway and H. Motomura. 2021 (May). First record of the Kermadec Clingfish, Flexor incus Conway, Stewart & Summers, 2018 (Gobiesocidae), from New Caledonia and Australia. CheckList, 17 (3): 769–773. Doi: 10.15560/17.3.769
48. 藤原恭司・鈴木寿之・本村浩之．2021 (Mar.)．西表島で撮影された水中写真に基づくEgglestonichthys rubidus（ハゼ科）の北半球からの初記録，およびEgglestonichthysの新標準和名ライテイハゼ属．Ichthy, Natural History of Fishes of Japan, 6: 74–75. Doi: 10.34583/ichthy.6.0_74 ．English title: First Northern Hemisphere record of Egglestonichthys rubidus (Gobiidae) based on an underwater photograph from Iriomote Island, Yaeyama Islands, Japan, and a proposal of the standard Japanese name for the genus Egglestonichthys.
47. Fujiwara, K., K. Kawama, N. Muto, H. Senou and H. Motomura. 2021 (Mar.). Validity and redescription of the poorly known Japanese blenny Alticus orientalis Tomiyama, 1955 (Perciformes, Blenniidae). Ichthyological Research, doi: 10.1007/s10228-020-00798-8 (27 Mar. 2021), 68 (4): 471–485 (22 Oct. 2021)
46. 中川龍一・樋之口蓉子・Kunto Wibowo・ジョン ビョル・和田英敏・藤原恭司・荒木萌里・望月健太郎・飯野友香・石原祥太郎・小川奈津・出羽優凪・本村浩之．2021 (Mar.)．鹿児島湾北部の霧島市小浜海岸の魚類相．Nature of Kagoshima, 47: 373–379. English title: Ichthyofauna of Obama Beach and adjacent area (northern Kagoshima Bay) in Hayato, Kirishima City, Kagoshima Prefecture, Japan. 査読なし non-peer reviewed
2020
45. Conway, K. W, C. D. King, A. P. Summers, D. Kim, P. A. Hastings, G. I. Moore, S. P. Iglésias, M. V. Erdmann, C. C. Baldwin, G. Short, K. Fujiwara, T. Trnski, G. Voelker and L. Rüber. 2020 (Dec.). Molecular phylogenetics of the clingfishes (Teleostei: Gobiesocidae) – Implications for classification. Copeia, 108 (4): 886–906. Doi: 10.1643/CI2020054
44. Fujiwara, K., T. Suzuki and H. Motomura. 2020 (Dec.). A new species of Egglestonichthys (Teleostei, Gobiiformes, Gobiidae) from Okinawa Island, Japan. ZooKeys, 1006: 91–98. Doi: 10.3897/zookeys.1006.58874
43. 冨森祐樹・藤原恭司・松沼瑞樹．2020 (Dec.)．和歌山県から得られたキビレハタEpinephelus macrospilos（ハタ科）の記録．日本生物地理学会会報，75: 71–76．English title: Record of Epinephelus macrospilos (Perciformes: Serranidae) from Wakayama Prefecture, Japan.
42. 藤原恭司・上原航知・松岡 翠・Kunto Wibowo・本村浩之．2020 (Dec.)．琉球列島と奄美群島初記録種を含 む沖永良部島初記録の魚類 50 種．Ichthy, Natural History of Fishes of Japan, 3: 30–40. Doi: 10.34583/ichthy.3.0_30．English title: First records of 50 fish species from Okinoerabu Island, the Amami Islands, Kagoshima, Japan.
41. Fujiwara, K. and H. Motomura. 2020 (Dec.). A new species of Lepadichthys from the Central South Pacific and comments on taxonomic status of Lepadichthys springeri Briggs, 2001 (Gobiesocidae). Copeia, 108 (4): 833–846. Doi: 10.1643/CI2020036
40. Fujiwara, K. and H. Motomura. 2020 (Dec.). An annotated checklist of marine and freshwater fishes of Kikai Island in the Amami Islands, Kagoshima, southern Japan, with 259 new records. Bulletin of the Kagoshima University Museum, 14: 1–73. 査読なし non-peer reviewed
39. Fujiwara, K., K. Hagiwara, T. Suzuki and H. Motomura. 2020 (Nov.). Acentrogobius limarius (Gobiidae) from the Ryukyu Islands, Japan: First Northern Hemisphere records. Species Diversity, 25 (2): 355–359. Doi: 10.12782/specdiv.25.355
38. 藤原恭司・高山真由美・本村浩之．2020 (Oct.)．長崎県から得られた九州初記録のサクライレズミハゼ Priolepis winterbottomi．Ichthy, Natural History of Fishes of Japan, 1: 15–18. Doi: 10.34583/ichthy.1.0_15．English title: First Kyushu record of Priolepis winterbottomi (Gobiidae) from Nagasaki Prefecture, Japan.
37. Fujiwara, K., T. Suzuki and H. Motomura. 2020 (June). First Pacific record of Priolepis goldshmidtae (Gobiidae), previously regarded as a Red Sea endemic. Cybium, 44 (2): 157–159. Doi: 10.26028/cybium/2020-442-006
36. 藤原恭司・伊東正英・本村浩之．2020 (Apr.)．鹿児島県薩摩半島西岸から得られた国内2例目のカガヤキミゾ イサキ，および過去20年間に同海域から新種・日本初記録種として記録された魚類リスト．Nature of Kagoshima, 46: 569–572．English title: The second Japanese record of Pomadasys kaakan from the west coast of Satsuma Peninsula, Kagoshima Prefecture, Japan, with a list of fishes described as new species or reported as the first Japanese record from the area for the past 20 years. 査読なし non-peer reviewed
35. Fujiwara, K., K. Hagiwara and H. Motomura. 2020 (Feb.). Redescription of Lepadichthys coccinotaenia Regan 1921 and description of Lepadichthys trishula sp. nov. from southern Japan (Gobiesocidae: Diademichthyinae). Ichthyological Research, doi: 10.1007/s10228-020-00737-7 (25 Feb. 2020), 67 (3): 422–438 (30 June 2020)
34. Fujiwara, K. and H. Motomura. 2020 (Jan.). Revised diagnosis of the rare clingfish Kopua nuimata (Gobiesocidae) with notes on fresh coloration and first Australian record. Species Diversity, 25 (1): 49–54. (25 Jan. 2020) Doi: 10.12782/specdiv.25.49
2019
33. 木村妙子・木村昭一・角井敬知・波々伯部夏美・倉持利明・藤田敏彦・小川晟人・小林 格・自見直人・岡西政典・山口 悠・広瀬雅人・吉川晟弘・福地 順・下村通誉・柏尾 翔・上野大輔・藤原恭司・成瀬 貫・櫛田優花・喜瀬浩輝・前川陽一・中村 亨・奥村順哉・田中香月．2019 (Nov.)．紀伊水道南方海域および熊野灘の深海底生動物相（第2報）．平成 30 年度三重大学フィールド研究・技術年報，17: 1–28．English title: Benthic deep-sea fauna in south of the Kii Strait and the Sea of Kumano, Japan. Second report. 査読なし non-peer reviewed
32. 藤原恭司・久米 元・本村浩之．2019 (Oct.)．鹿児島県から得られたシャチブリ科の稀種ヒョウモンシャチブ リ．Nature of Kagoshima, 46: 155–158．English title: Record of a rare species of Ateleopodidae, Guentherus katoi, from off Uji Islands, Kagoshima Prefecture, Japan. 査読なし non-peer reviewed
31. Fujiwara, K., T. Suzuki and H. Motomura. 2019 (Oct.). Two new dwarfgobies (Gobiidae) from southern Japan: Eviota amamiko and Eviota perspicilla. Ichthyological Research, doi 10.1007/s10228-019-00712-x (12 Oct. 2019), 67 (1): 139–154. (17 Jan. 2020)
30. Fujiwara, K. and H. Motomura. 2019 (June). Kopua minima (Döderlein 1887), a senior synonym of K. japonica Moore, Hutchins and Okamoto 2012, and description of a new species of Aspasma (Gobiesocidae). Ichthyological Research, doi / 10.1007/s10228-019-00701-0 (25 June 2019), 67 (1): 50– 67. (17 Jan. 2020)
29. 緒方悠輝也・山﨑裕太・藤原恭司・村瀬敦宣．2019 (June)．門川湾で採集された宮崎県初記録のウバウオ科魚類ヒメウバウオ．Nature of Kagoshima, 46: 17–20．English title: First Miyazaki record of Propherallodus briggsi (Gobiesocidae) from Kadogawa Bay, southern Japan. 査読なし non-peer reviewed
28. 藤原恭司・鈴木寿之・本村浩之．2019 (May)．鹿児島県薩摩半島西岸から得られた九州初記録のハゼ亜目魚類8種．Nature of Kagoshima, 45: 405–410．English title: First Kyushu records of eight species of Gobioidei from the western coast of Satsuma Peninsula, Kagoshima Prefecture, Japan. 査読なし non-peer reviewed
27. 藤原恭司・本村浩之．2019 (May)．鹿児島県南さつま市における2018–2019年の魚類相調査で得られた九州沿岸初記録の魚類9種．Nature of Kagoshima, 45: 397–403．English title: First Kyushu records of nine fish species collected from Minami-satsuma, Kagoshima Prefecture, Japan, during ichthyofaunal surveys in 2018–2019. 査読なし non-peer reviewed
26. 藤原恭司・宮本 圭・本村浩之．2019 (Mar.)．与那国島から得られた沖縄県初記録のキオビイズハナダイ．Nature of Kagoshima, 45: 255–257．English title: First Okinawa record of Plectranthias sheni (Serranidae) from Yonaguni-jima island in the Yaeyama Islands, Japan. 査読なし non-peer reviewed
25. 荻野 星・平 瑞樹・田代郷国・Sirikanya Chungthanawong・和田英敏・藤原恭司・川間公達・Emmanuel S. Delloro Jr.・荒木萌里・立川日奈子・松沼瑞樹．2019 (Feb.)．鹿児島県いちき串木野市観音ヶ池の護岸工事水抜きに伴う魚類相の現状把握．Nature of Kagoshima, 45: 225–228．English title: Fishes collected in the Kannonga-ike pond (Ichiki-kushikino City, Kagoshima Prefecture) immediately after draining the pond. 査読なし non-peer reviewed
24. Fujiwara, K., H. Wada and H. Motomura. 2019 (Feb.). A new species of the greeneye genus Chlorophthalmus (Teleostei: Chlorophthalmidae) from the central North Pacific. Zootaxa, 4555 (3): 396– 406. Doi: 10.11646/zootaxa.4555.3.8
23. 藤原恭司・吉田朋弘・本村浩之．2019 (Feb.)．屋久島におけるチャイロヤッコ（キンチャクダイ科）の標本に基づく初めての記録．Nature of Kagoshima, 45: 217–219．English title: First specimen-based record of Centropyge fisheri (Pomacanthidae) from Yaku-shima island, the Osumi Islands, Japan. 査読なし non-peer reviewed
22. Fujiwara, K. and H. Motomura. 2019 (Feb.). Validity of Lepadichthys misakius (Tanaka 1908) and redescription of Lepadichthys frenatus Waite 1904 (Gobiesocidae: Diademichthyinae). Zootaxa, 4551 (3): 275–298. Doi: 10.11646/zootaxa.4551.3.2
2018
21. 藤原恭司・鈴木寿之・本村浩之．2018 (Dec.)．シマミドリハゼとキビレイソハゼ（ハゼ科イソハゼ属）の日本における分布状況．Nature of Kagoshima, 45: 89–97．English title: Review of Japanese records of Eviota afelei and Eviota flavipinnata (Teleostei: Gobiidae). 査読なし non-peer reviewed
20. Fujiwara, K. and H. Motomura. 2018 (June). A new species, Propherallodus longipterus, from the Philippines and redescription of P. briggsi Shiogaki and Dotsu 1983 (Gobiesocidae: Diplocrepinae). Ichthyological Research, doi /10.1007/s10228-018-0645-4 (19 July 2018), 66 (1): 35–48 (25 Jan. 2019)
19. Fujiwara, K. and H. Motomura. 2018 (May). Revised diagnosis and first Northern Hemisphere records of the rare clingfish Lepadichthys akiko (Gobiesocidae: Diademichthyinae). Species Diversity, 23 (1): 87–93. Doi: 10.12782/specdiv.23.87
18. Fujiwara, K., M. Okamoto and H. Motomura. 2018 (Apr.). Review of the clingfish genus Kopua (Gobiesocidae: Trachelochisminae) in Japan, with description of a new species. Ichthyological Research, doi 10.1007/s10228-018-0633-8 (22 May 2018), 65: 433–453 (6 Nov. 2018)
17. Nakae, M., H. Motomura, K. Hagiwara, H. Senou, K. Koeda, T. Yoshida, S. Tashiro, B. Jeong, H. Hata, Y. Fukui, K. Fujiwara, T. Yamakawa, M. Aizawa, G. Shinohara and K. Matsuura. 2018 (Mar.). An annotated checklist of fishes of Amami-oshima Island, the Ryukyu Islands, Japan. Memoirs of the National Museum of Nature and Science, Tokyo (52): 205–361. 査読なし non-peer reviewed
16. 藤原恭司・伊東正英・Kunto Wibowo・本村浩之．2018 (Feb.)．鹿児島県から採集された準絶滅危惧種ハナザメのアルビノ．Nature of Kagoshima, 44: 151–155．English title: Record of an albino Spinner Shark Carcharhinus brevipinna (Carcharhinidae) from Kagoshima, southern Japan. 査読なし non-peer reviewed
15. 藤原恭司・田上英明・毛利雅彦・鎌野 忠・秦 一浩・岡田翔平・永井節子・本村浩之．2018 (Jan.)．山口県響灘および見島から採集された日本海初記録を含む魚類．水産大学校研究報告，66 (2): 47–80．English title: Fishes of the Hibiki-nada Sea and Mi-shima island, Yamaguchi Prefecture, Japan.
2017
14. 藤原恭司・田代郷国・高山真由美・瀬能 宏・本村浩之．2017 (Nov.)．ハタ科イズハナダイ属魚類Plectranthias sheniの日本からの記録と適用すべき標準和名の検討．魚類学雑誌，64 (2): 121–129．English title: Records of the anthiine fish Plectranthias sheni from Japan and proposal of a new standard Japanese name. Japan.
13. 藤原恭司・伊東正英・本村浩之．2017 (Nov.)．鹿児島県から得られた日本初記録のタイ科魚類Acanthopagrus taiwanensisイワツキクロダイ（新称）．魚類学雑誌，64 (2): 107–112．English title: First Japanese record of Acanthopagrus taiwanensis (Perciformes: Sparidae) from Kagoshima Prefecture.
12. Fujiwara, K., M. Okamoto, U. B. Alama and H. Motomura. 2017 (Oct.). First records of the acropomatid fish (Teleostei: Perciformes), Parascombrops yamanouei, from Japan and the Philippines. Biogeography, 19: 85–92.
11. 藤原恭司・岡本 誠・本村浩之．2017 (May)．トカラ列島西方から得られた琉球列島初記録のハゼ科魚類ホオ ベニオトヒメハゼ．Nature of Kagoshima, 43: 231–234．English title: First record of Vanderhorstia puncticeps (Gobiidae: Gobiinae) from off the Ryukyu Islands, Japan. 査読なし non-peer reviewed
10. 藤原恭司・本村浩之．2017 (May)．奄美群島から得られたウバウオ科魚類 2 種：タスジウミシダウバウオと ホソウバウオ．Nature of Kagoshima, 43: 223–229．English title: Records of two species of clingfishes (Perciformes: Gobiesocidae), Lepadichthys lineatus and Pherallodus indicus, from the Amami Islands, southern Japan. 査読なし non-peer reviewed
09. 藤原恭司・伊東正英・岩坪洸樹・本村浩之．2017 (May)．トビウオ科魚類シロフチトビウオとチャバネトビウ オの鹿児島県本土からの初記録．Nature of Kagoshima, 43: 81–87．English title: First records of Cypselurus furcatus and Cypselurus spilonotopterus (Beloniformes: Exocoetidae) from the Kagoshima mainland, southern Japan. 査読なし non-peer reviewed
08. 藤原恭司・本村浩之．2017 (May)．鹿児島県本土から得られた九州初記録のエソ科魚類チョウチョウエソ． Nature of Kagoshima, 43: 45–48．English title: First records of Synodus macrops (Aulopiformes: Synodontidae) from coastal waters of Kyushu, southern Japan. 査読なし non-peer reviewed
2016
07. 藤原恭司・本村浩之．2016 (Dec.)．クロサギ科魚類タイワンサギの日本における分布状況．日本生物地理学会会報，71: 125–130．English title: Review of Japanese records of Pentaprion longimanus (Perciformes: Gerreidae).
06. 藤原恭司・本村浩之．2016 (Mar.)．標本に基づく鹿児島県のヒイラギ科魚類相．Nature of Kagoshima, 42: 187–202．English title: Ponyfishes (Perciformes: Leiognathidae) of Kagoshima Prefecture, southern Japan. 査読なし non-peer reviewed
05. 田上英明・藤原恭司・中原高志・小川真拓・秦 一浩・江野島岳友・後藤洋史・小勝正貴・伊藤貴史・高橋 洋・小松輝久・毛利雅彦．2016 (May)．山口県萩市見島沖合における表中層トロール（天鷹丸232次航海） 漁獲物の多様性．水産大学校研究報告，64 (4): 241–247．English title: Diversity of fishes caught (T/V Tenyo Maru’s 232nd voyage) by sea-surface and mid-water trawl off Mishima Island, Japan Sea.
04. Tanoue, H., A. Nozoe, K. Fujiwara and M. Mohri. 2016 (Jan.). Changes in fishes caught by set net fishery observed by taxonomic distinctness: preliminary study using the set net data on Futaoi Island, Simonoseki, Japan. Mathematical and Physical Fisheries Science, 13: 1–9.
2015
03. 藤原恭司・高山真由美・桜井 雄・本村浩之．2015 (Aug.)．日本におけるハタ科魚類キテンハタ Epinephelus bleekeri の記録と分布状況．タクサ，39: 40–46．English title: Records of Epinephelus bleekeri (Perciformes: Serranidae) from Japan, with notes on distributional implications.
2014
02. 藤原恭司・畑 晴陵・本村浩之．2014 (Mar.)．標本に基づく鹿児島県のイトヨリダイ科魚類相．Nature of Kagoshima, 40: 63–71．English title: Nemipterid fishes of Kagoshima Prefecture, southern Japan. 査読なし non-peer reviewed
01. 畑 晴陵・藤原恭司・高山真由美・本村浩之．2014 (Mar.)．鹿児島県から得られたイサキ科エリアカコショウ ダイPlectorhinchus schotafの記録．Nature of Kagoshima, 40: 41–45．English title: First records of Plectorhinchus schotaf (Perciformes: Haemulidae) from Kagoshima Prefecture, southern Japan. 査読なし non-peer reviewed
Engulish articles: 40 papers, including 6 non-peer reviewed paper (first author: 33)
Japanese articles: 37 papers, including 19 non-peer reviewed papers (first author: 27)
Books
09. 藤原恭司．2024 (Dec.)．マルバラユメザメ・カエルザメ，P. 19；トモメヒカリ・アオメエソ，P. 51；アカナマダ，P. 63；オキアカグツ・テンジクアカグツ，P. 82；イトヒキカガミダイ，P. 94；マトウダイ，P. 95；オニガシラ，P. 122；キオビイズハナダイ，P. 125；ヨザクラウバウオ，P. 155；ライテイハゼ・ミスジチヒロハゼ・ヤミハゼ，P. 156.
In 岡本 誠・本村浩之（編）．2024 (Dec.)．日本の深海魚図鑑．山と渓谷社，東京．183 pp.
08. 藤原恭司．2023 (June)．チョウチョウウオ科 ，Pp. 174–178；ウバウオ科，Pp . 214–215；クロユリハゼ科 ，P. 222.
In 本村浩之（総監）．2023 (June)．学研の図鑑LIVE 魚 新版．Gakken，東京．296 pp.
07. 藤原恭司．2023 (Mar.)．コノシロ・カタボシイワシ・カタクチイワシ，P. 26；ネズミゴチ・ハナビヌメリ，P. 41；アベハゼ，P. 48.
In 樋之口蓉子・田島奏一朗・是枝伶旺・本村浩之（編）．2023 (Mar.)．錦江湾奥 干潟の生き物図鑑．特定非営利活動法人くすの木自然館，姶良．100 pp.
06. 藤原恭司．2022 (Feb.)．サイウオ科，P. 43；ホタルジャコ科，P. 90；キツネアマダイ科，P. 114；アオバダイ科，P. 158；チョウチョウウオ科，Pp. 159–166；キンチャクダイ科，Pp. 167–169；カワビシャ科，P. 170；ウバウオ科，Pp. 232–233.
田代郷国・藤原恭司．2022 (Feb.)．ホカケトラギス科，P. 220；ベラギンポ科，P. 220；ミシマオコゼ科，P. 221.
川間公達・藤原恭司・是枝伶旺．2022 (Feb.)．イソギンポ科，Pp. 225–233.
田代郷国・是枝伶旺・藤原恭司．2022 (Feb.)．ハゼ科，Pp. 237–267.
In 岩坪洸樹・伊東正英・山田守彦・本村浩之（編）．2022 (Feb.)．薩摩半島沿岸の魚類．鹿児島水圏生物博物館，枕崎市・鹿児島大学総合研究博物館，鹿児島市．329 pp., 1833 figs.
05. Fujiwara, K. 2021 (Jan.). Gobiesocidae, P. 66; Gobiidae (in part), Pp. 68–71.
In Motomura, H., S. Kimura, Y. G. Seah, S. T. Sheikh Abdul Kadir, and M. A. Ghaffar (eds). 2021 (Jan.). Reef and shore fishes of Bidong Island, off east coast of Malay Peninsula. The Kagoshima University Museum, Kagoshima. 80 pp., 224 figs.
04. 藤原恭司．2020 (Sept.)．ヒイラギ，P. 74；シロギス，P. 80；トビハゼ，P. 109；ヒラメ，P. 118.
In 本村浩之・ 山本智子・田金秀一郎（編）．2020 (Sept.)．鹿児島県北西部 不知火海にそそぐ 高尾野川河口周辺の生きものたち．鹿児 島大学総合研究博物館，鹿児島．316 pp.
03. 藤原恭司．2019 (Feb.)．チョウチョウウオ科，Pp. 198–207；ウバウオ科，Pp. 327–329.
In 本村浩之・萩原 清司・瀬能 宏・中江雅典（編）．2019 (Feb.)．奄美群島の魚類図鑑．南日本新聞開発センター，鹿児島．438 pp., 3370 figs.
02. 藤原恭司．2018 (Mar.)．チョウチョウウオ科，Pp. 195–204；ウバウオ科，Pp. 323–325.
In 本村浩之・萩原 清司・瀬能 宏・中江雅典（編）．2018 (Mar.)．奄美群島の魚類．鹿児島大学総合研究博物館，鹿児島市・横須賀自然・人 文博物館，横須賀市・神奈川県立生命の星・地球博物館，小田原市・国立科学博物館，つくば市，414 pp., 3290 figs.
01. Fujiwara, K. 2017 (Jan.). Nemipteridae (in part), Pp. 148–152.
In Motomura, H., U. B. Alama, N. Muto, R. Babaran, and S. Ishikawa (eds.). 2017 (Jan.). Commercial and bycatch market fishes of Panay Island, Republic of the Philippines. The Kagoshima University Museum, Kagoshima, University of the Philippines Visayas, Iloilo, and Research Institute for Humanity and Nature, Kyoto. 246 pp., 911 figs.
Others
09. 藤原恭司．2025 (Sept.)．第28回大学博物館等協議会・第20回日本博物科学会に参加して．京都大学総合博物館ニュースレター，64: 5.
08. 藤原恭司．2025 (Sept.)．新任スタッフ．京都大学総合博物館ニュースレター，64: 3.
07. 藤原恭司．2023 (Feb.)．鹿児島の海水魚2．地球らいぶ，19: 13–14.
06. 藤原恭司・本村浩之．2023 (July)．喜界島の珊瑚礁の魚類100 （ポスター）
05. 藤原恭司．2022 (Dec.)．伊豆半島の海水魚2．地球らいぶ，17: 11–12.
04. 藤原恭司．2022 (Oct.)．伊豆半島の海水魚．地球らいぶ，15: 11–12.
03. 藤原恭司．2022 (Aug.)．鹿児島の海水魚．地球らいぶ，13: 8–10.
02. 藤原恭司．2022 (Mar.)．学生奮闘記 奄美群島での魚類の研究－新種の発見や魚類リストの作成－．島嶼研だより，83 (1): 3.
01. 藤原恭司．2020 (Mar.)．博士論文研究に係る2019年度の海外渡航記．鹿児島大学総合研究博物館ニューズレター， 45: 4–7.
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