PUBLICATION

投稿中の論文

• Tomoki Ohkubo, Yuichi Sakumura, Fuzhong Zhang, Katsuyuki Kunida, Designing a hybrid in silico/in-cell controller robust to process-model mismatch associated with dynamically regulated enzyme overexpression, bioRxiv  Feb, 2024.

学術論文（査読付き）

1. Yoji Nomura, Takanori Suzuki, Katsuyuki Kunida, Hidetoshi Uchida, Ryoichi Ito, Yasunori Oshima, Machiko Kito, Yuki Imai, Satoru Kawai, Kei Kozawa, Kazuyoshi Saito, Tadayoshi Hata, Junichiro Yoshimoto, Tetsushi Yoshikawa, Kazushi Yasuda, Analysis of cytokine profiles in pediatric fulminant myocarditis and acute myocarditis multicenter study, Pediatric Cardiology,  Online ahead of print, Mar 13, 2024.

2. Tomoki Ohkubo, Yuichi Sakumura, Katsuyuki Kunida, On-Line Reoptimization of Mammalian Fed-Batch Culture Using a Nonlinear Model Predictive Controller,  New Generation Computing, Online ahead of print, Nov 4, 2023.

3. Yuishi Sakumura, Katsuyuki Kunida, Extracting quantitative relationships between cell motility and molecular activities: analytical approaches and implications, Journal of Biomechanical Science and Engineering 18(4) 23-00336 Oct 14, 2023.

4. Tomoki Ohkubo, Yuki Soma, Yuichi Sakumura, Taizo Hanai, Katsuyuki Kunida, A hybrid in silico/in-cell controller for microbial bioprocesses with process-model mismatch, Scientific Reports 13(1) Sep, 2023.プレスリリース,  EurekAlert!, Genetic Engineering & Biotechnology News (GEN),  Top 100 downloaded Cell and Molecular Biology papers published in Scientific Reports of 2023

5. Katsuyuki Kunida, Nobuhiro Takagi, Kazuhiro Aoki, Kazushi Ikeda, Takeshi Nakamura, Yuichi Sakumura, Decoding cellular deformation from pseudo-simultaneously observed Rho GTPase activities, Cell Reports 42(2) 112071-112071 Feb, 2023. プレスリリース, EurekAlert! 

6. Daisuke Hoshino, Kentaro Kawata, Katsuyuki Kunida, Atsushi Hatano, Katsuyuki Yugi, Takumi Wada, Masashi Fujii, Takanori Sano, Yuki Ito, Yasuro Furuichi, Yasuko Manabe, Yutaka Suzuki, Nobuharu L Fujii, Tomoyoshi Soga, Shinya Kuroda, Trans-omic Analysis Reveals ROS-Dependent Pentose Phosphate Pathway Activation after High-Frequency Electrical Stimulation in C2C12 Myotubes, iScience 23(10) 101558-101558 Sep, 2020.

7. Takumi Wada, Ken-Ichi Hironaka, Mitsutaka Wataya, Masashi Fujii, Miki Eto, Shinsuke Uda, Daisuke Hoshino, Katsuyuki Kunida, Haruki Inoue, Hiroyuki Kubota, Tsuguto Takizawa, Yasuaki Karasawa, Hirofumi Nakatomi, Nobuhito Saito, Hiroki Hamaguchi, Yasuro Furuichi, Yasuko Manabe, Nobuharu L Fujii, Shinya Kuroda, Single-Cell Information Analysis Reveals That Skeletal Muscles Incorporate Cell-to-Cell Variability as Information Not Noise, Cell Reports 32(9) 108051-108051 Sep, 2020.

8. Naoki Matsuda, Ken-ichi Hironaka, Masashi Fujii, Takumi Wada, Katsuyuki Kunida, Haruki Inoue, Miki Eto, Daisuke Hoshino, Yasuro Furuichi, Yasuko Manabe, Nobuharu L. Fujii, Hiroyuki Noji, Hiromi Imamura, Shinya Kuroda, Monitoring and mathematical modeling of mitochondrial ATP in myotubes at single-cell level reveals two distinct population with different kinetics, Quantitative Biology 8 228-237 Jun, 2020.

9. Haruki Inoue, Katsuyuki Kunida, Naoki Matsuda, Daisuke Hoshino, Takumi Wada, Hiromi Imamura, Hiroyuki Noji, Shinya Kuroda, Automatic Quantitative Segmentation of Myotubes Reveals Single-cell Dynamics of S6 Kinase Activation, Cell Structure and Function 43(2) 153-169 Aug, 2018.

10. Takaho Tsuchiya, Masashi Fujii, Naoki Matsuda, Katsuyuki Kunida, Shinsuke Uda, Hiroyuki Kubota, Katsumi Konishi, Shinya Kuroda, System identification of signaling dependent gene expression with different time-scale data, PLOS Computational Biology 13(12) Dec, 2017

11. Takanori Sano, Kentaro Kawata, Satoshi Ohno, Katsuyuki Yugi, Hiroaki Kakuda, Hiroyuki Kubota, Shinsuke Uda, Masashi Fujii, Katsuyuki Kunida, Daisuke Hoshino, Atsushi Hatano, Yuki Ito, Miharu Sato, Yutaka Suzuki, Shinya Kuroda, Selective control of up-regulated and down-regulated genes by temporal patterns and doses of insulin, Science Signaling 9(455) 112 Nov, 2016

12. Sarah Filippi, Chris P. Barnes, Paul D. W. Kirk, Takamasa Kudo, Katsuyuki Kunida, Siobhan S. McMahon, Takaho Tsuchiya, Takumi Wada, Shinya Kuroda, Michael P. H. Stumpf, Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling, Cell Reports 15(11) 2524-2535 Jun, 2016

13. Masataka Yamao, Honda Naoki, Katsuyuki Kunida, Kazuhiro Aoki, Michiyuki Matsuda, Shin Ishii, Distinct predictive performance of Rac1 and Cdc42 in cell migration, Scientific Reports 4(5) 17527 Dec, 2015.

14. Yoshihiro Katsura, Hiroyuki Kubota, Katsuyuki Kunida, Akira Kanno, Shinya Kuroda, Takeaki Ozawa, An optogenetic system for interrogating the temporal dynamics of Akt, Scientific Reports 1(5) 14589-14589 Aug, 2015.

15. Katsuyuki Yugi, Hiroyuki Kubota, Yu Toyoshima, Rei Noguchi, Kentaro Kawata, Yasunori Komori, Shinsuke Uda, Katsuyuki Kunida, Yoko Tomizawa, Yosuke Funato, Hiroaki Miki, Masaki Matsumoto, Keiichi I. Nakayama, Kasumi Kashikura, Keiko Endo, Kazutaka Ikeda, Tomoyoshi Soga, Shinya Kuroda, Reconstruction of Insulin Signal Flow from Phosphoproteome and Metabolome Data, Cell Reports 8(4) 1171-1183 Aug, 2014.

16. Katsuyuki Kunida, Michiyuki Matsuda, Kazuhiro Aoki, FRET imaging and statistical signal processing reveal positive and negative feedback loops regulating the morphology of randomly migrating HT-1080 cells, Journal of Cell Science 125(10) 2381-2392 May, 2012

17. Kazuhiro Aoki, Masashi Yamada, Katsuyuki Kunida, Shuhei Yasuda, Michiyuki Matsuda, Processive phosphorylation of ERK MAP kinase in mammalian cells, Proceedings of the National Academy of Sciences of the United States of America 108(31) 12675-12680 Aug, 2011.

18. Maria Carla Parrini, Amel Sadou-Dubourgnoux, Kazuhiro Aoki, Katsuyuki Kunida, Marco Biondini, Anastassia Hatzoglou, Patrick Poullet, Etienne Formstecher, Charles Yeaman, Michiyuki Matsuda, Carine Rosse, Jacques Camonis, SH3BP1, an Exocyst-Associated RhoGAP, Inactivates Rac1 at the Front to Drive Cell Motility, Molecular Cell 42(5) 650-661 Jun, 2011

解説記事（査読なし）

1. 小西克巳、藤井雅史、国田勝行、宇田新介、黒田真也、”システム同定に基づく細胞内シグナル伝達機構の解明”、「システム／制御／情報」 61(7) 259-264 2017年。

2. 木下晴之、前川敏郎、国田勝行、黒田真也、藤井輝夫、"細胞応答計測のためのマイクロ流体制御技術と細胞培養システム"、「システム／制御／情報」 61(7) 2017年。

3. 国田 勝行、青木 一洋、"定量的FRETイメージングによる細胞運動メカニズムの解明"、画像ラボ 25(6) 17-23 2014年。

4. 国田 勝行、青木 一洋、"定量的FRETイメージングと数理モデリングによる細胞運動を制御する分子ネットワークの同定"、映像情報メディア学会 67(9) 776-780 2013年。

その他（Proceedingsや学会発表など）

researchmapをご覧ください。