Publications

2024

Lisa Meyer-Baese, Arthur E. Morrissette, Yunmiao Wang, Brune Le Chatelier, Peter Y. Borden, Shella D. Keilholz, Garrett B. Stanley and Dieter Jaeger. Cortical Networks Relating to Arousal Are Differentially Coupled to Neural Activity and Hemodynamics, JNeurosci

Dolly T Seeburger, Nan Xu, Marcus Ma, Sam Larson, Christine Godwin, Shella D Keilholz, Eric H Schumacher. Time-varying functional connectivity predicts fluctuations in sustained attention in a serial tapping task, Cognitive, Affective, & Behavioral Neuroscience

Shella Keilholz. Why I left the editorial board of the prestigious scientific journal NeuroImage — and helped start something new, Policy Commons

2023

Nmachi Anumba, Eric Maltbie, Wen-Ju Pan, Theodore J. LaGrow, Nan Xu, Shella Keilholz. Spatial and Spectral Components of the BOLD Global Signal in Rat Resting-State Functional MRI, Magnetic Resonance in Medicine

Nan Xu, Derek M Smith, George Jeno, Dolly T Seeburger, Eric H Schumacher, Shella D Keilholz. The interaction between random and systematic visual stimulation and infraslow quasiperiodic spatiotemporal patterns of whole brain activity, Imaging Neuroscience

Nan Xu, Leo Zhang, Sam Larson, Zengmin Li, Nmachi Anumba, Lauren Daley, Wen-Ju Pan, Kai-Hsiang Chuang, Shella D Keilholz. Rodent Whole-Brain fMRI Data Preprocessing Toolbox, Aperture Neuro

Amrit Kashyap, Sergey Plis, Petra Ritter, Shella Keilholz. A deep learning approach to estimating initial conditions of Brain Network Models in reference to measured fMRI data, Frontiers Neuroscience

Joanes Grandjean et al., A consensus protocol for functional connectivity analysis in the rat brain, Nature Neuroscience

2022

Lisa Meyer-Baese, Harrison Watters, Shella Keilholz. Spatiotemporal patterns of spontaneous brain activity: a mini-review, Neurophotonics

Nan Xu, Theodore J LaGrow, Nmachi Anumba, Xiaodi Zhang, Behnaz Yousefi, Azalea Lee, Yasmine Bassil, Gloria Perrin Clavijo, Vahid Khalilzad, Eric Maltbie, Lisa Meyer-Baese, Maysam Nezafati, Harry Watters, Wen-Ju Pan, Shella Keilholz. Functional Connectivity of the Brain Across Rodents and Humans, Frontiers Neuroscience

Boris C Bernhardt, Jonathan Smallwood, Shella Keilholz, Daniel S Margulies. Gradients in Brain Organization, NeuroImage

Taylor Bolt, Jason S Nomi, Danilo Bzdok, Catie Chang, BT Thomas Yeo, Lucina Q Uddin, Shella D Keilholz. A Parsimonious Description of Global Functional Brain Organization in Three Spatiotemporal Patterns, Nature Neuroscience

2021

Patricia Pais-Roldán, Celine Mateo, Wen-Ju Pan, Ben Acland, David Kleinfeld, Lawrence H Snyder, Xin Yu, Shella Keilholz. Contribution of animal models toward understanding resting state functional connectivity, NeuroImage

Xiaodi Zhang, Eric A Maltbie, Shella D Keilholz. Spatiotemporal trajectories in resting-state FMRI revealed by convolutional variational autoencoder, NeuroImage

Jacob Billings, Manish Saggar, Jaroslav Hlinka, Shella Keilholz, Giovanni Petri. Simplicial and topological descriptions of human brain dynamics, Network Neuroscience

Behnaz Yousefi, Shella Keilholz. Propagating patterns of intrinsic activity along macroscale gradients coordinate functional connections across the whole brain, NeuroImage

Michaël E Belloy, Jacob Billings, Anzar Abbas, Amrit Kashyap, Wen-Ju Pan, Rukun Hinz, Verdi Vanreusel, Johan Van Audekerke, Annemie Van der Linden, Shella D Keilholz, Marleen Verhoye, Georgios A Keliris. Resting brain fluctuations are intrinsically coupled to visual response dynamics, Cerebral Cortex

Nan Xu, Peter C Doerschuk, Shella D Keilholz, R Nathan Spreng. Spatiotemporal functional interactivity among large-scale brain networks, Neuroimage

Amrit Kashyap, Sergey Plis, Michael Schirner, Petra Ritter, Shella Keilholz. A DEEP LEARNING APPROACH TO ESTIMATING INITIAL CONDITIONS OF BRAIN NETWORK MODELS IN REFERENCE TO MEASURED FMRI DATA, bioRxiv

2020

Frederic Briend William P. Armstrong Nina V. Kraguljac Shella D. Keilholz Adrienne C. Lahti (2020). Aberrant static and dynamic functional patterns of frontoparietal control network in antipsychotic‐naïve first‐episode psychosis subjects, Human Brain Mapping

Zhang, X., Pan, W. J., & Keilholz, S. D. (2020). The relationship between BOLD and neural activity arises from temporally sparse events. NeuroImage, 207, 116390

N Xu, PC Doerschuk, SD Keilholz, RN Spreng (2020). Spatiotemporal functional interactivity among large-scale brain networks. bioRxiv, preprint

Daniel J Lurie, Daniel Kessler, Danielle S Bassett, Richard F Betzel, Michael Breakspear, Shella Kheilholz, Aaron Kucyi, Raphaël Liégeois, Martin A Lindquist, Anthony Randal McIntosh, Russell A Poldrack, James M Shine, William Hedley Thompson, Natalia Z Bielczyk, Linda Douw, Dominik Kraft, Robyn L Miller, Muthuraman Muthuraman, Lorenzo Pasquini, Adeel Razi, Diego Vidaurre, Hua Xie, Vince D Calhoun (2020). Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Network Neuroscience 4 (1), 30-69

Francesca Mandino, Domenic H Cerri, Clement M Garin, Milou Straathof, Geralda AF van Tilborg, M Mallar Chakravarty, Marc Dhenain, Rick M Dijkhuizen, Alessandro Gozzi, Andreas Hess, Shella D Keilholz, Jason P Lerch, Yen-Yu Ian Shih, Joanes Grandjean (2020). Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization. Frontiers in Neuroinformatics 13, 78 

2019

Abbas, A., Belloy, M., Kashyap, A., Billings, J., Nezafati, M., Schumacher, E. H., & Keilholz, S. (2019). Quasi-periodic patterns contribute to functional connectivity in the brain. Neuroimage, 191, 193-204

Abbas, A., Bassil, Y., & Keilholz, S. (2019). Quasi-periodic patterns of brain activity in individuals with attention-deficit/hyperactivity disorder.  NeuroImage: Clinical, 101653

Kashyap, A., & Keilholz, S. (2019). Dynamic properties of simulated brain network models and empirical resting-state data. Network Neuroscience, 3(2), 405-426

Kashyap, A., Keilholz, S. (2019) Dynamic properties of simulated brain network models and empirical resting-state data. Netw Neurosci. 3(2):405-426. PMID: 30793089

Kashyap, A., & Keilholz, S. (2019). Brain Network Constraints and Recurrent Neural Networks reproduce unique Trajectories and State Transitions seen over the span of minutes in resting state fMRI. bioRxiv, 798520

Abbas, A., Bassil, Y., & Keilholz, S. (2019). Quasi-periodic patterns of brain activity in individuals with Attention-Deficit/Hyperactivity Disorder. NeuroImage: Clinical, 21, 101653