Publication 文章

Peer-reviewed Journal Paper

1. Associations of anomalous water temperature, salinity, and pH with change in water color of fish farming ponds 

   • Chuang C-H, Chiu U-C, Huang C-W, and Chang KY(*). Journal of the World Aquaculture Society, 54:1563–1574, 2023.

   • IF = 3.402; 12/54 (Fisheries - SCIE)

2. Identifying Drug Candidates for COVID-19 with Large-Scale Drug Screening 

   • Wu Y, Pegan SD, Crich D, Lou L, Mullininx LN, Starling EB, Booth C, Chishom AE, Chang KY(*), and Xie Z-R*. International Journal of Molecular Sciences, 24(5), 4397, 2023.

   • IF = 6.208; 67/297 (Biochemistry & Molecular Biology - SCIE)

3. Polyphenols as Potential Inhibitors of SARS-CoV-2 RNA Dependent RNA Polymerase (RdRp) 

   • Wu Y, Crich D, Pegan SD, Lou L, Hansen MC, Booth C, Desrochers E, Mullininx LN, Starling EB, Chang KY(*), and Xie Z-R*. Molecules, 26(24), 7438, 2021.

   • IF = 4.927; 63/178 (Chemistry, Multidisciplinary - SCIE)    

4. DeepFlu: a deep learning approach for forecasting symptomatic influenza A infection based on pre-exposure gene expression

   • Zan A, Xie Z-R, Hsu Y-C, Chen Y-H, Lin T-H, Chang Y-S, and Chang KY(*). Computer Methods and Programs in Biomedicine, 213, 106495, 2022.

   • IF = 7.027; 13/110 ( Computer Science, Theory & Methods- SCIE)

5. Polyphenols as Alternative Treatments of COVID-19

   • Wu Y, Pegan SD, Crich D, Hansen MC, Starling EB, Ellison Desrochers E, Booth C, Mullininx LN, Lou L, Chang KY(*), and Xie Z-R(*). Computational and Structural Biotechnology Journal, 19:5371-5380, 2021.

   • IF = 7.271; 45/297 (Biochemistry & Molecular Biology - SCIE)

6. DeepDISE: DNA Binding Site Prediction Using a Deep Learning Method

   • Hendrix SG, Chang KY, Ryu Z, and Xie Z-R. International Journal of Molecular Sciences, 22(11), 5510, 2021. 

   • IF = 6.208; 67/297 (Biochemistry & Molecular Biology - SCIE)

7. Structural and Functional Enrichment Analyses for Antimicrobial Peptides

   • Lo SC, Xie Z-R, and Chang KY(*). International Journal of Molecular Sciences, 21(22), 8783, 2020. 

   • IF = 6.208; 67/297 (Biochemistry & Molecular Biology - SCIE)

8. In silico identification of drug candidates against COVID-19

   • Wu Y, Chang KY, Lou L, Edwards LG, Doma BK, and Xie Z-R. Informatics in Medicine Unlocked, 21:100461, 2020.

9. Trends in Regional Cancer Mortality in Taiwan 1992-2014

   • Ho YR, Ma S-P, and Chang KY(*). Cancer Epidemiology, 59:185-192, 2019. 

   • IF = 2.984; 88/203 (PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH - SCIE)  

10. Associations between Water Quality Measures and Chronic Kidney Disease Prevalence in Taiwan

    • Chang KY, Wu IW, Huang BR, Juang JG, Wu JC, Chang SW, and Chang CC. International Journal of Environmental Research & Public Health, 15(12), 2018.

    • IF = 3.390; 41/176 (PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH - SSCI)

11. Large-Scale Analysis of Antimicrobial Activities in relation to Amphipathicity and Charge Reveals Novel Characterization of Antimicrobial Peptides.

    • Wang C.-K., Shih L.-Y., and Chang KY (*). Molecules, 22(11), 2037, 2017.

    • One of the most cited papers of Molecules in 2018-2019

    • IF = 4.412; 63/178 (Chemistry, Multidisciplinary - SCIE)          

12. Peptidomic analysis of Type-1 diabetes associated HLA-DQ molecules and the impact of HLA-DM on peptide repertoire editing.

    • Zhou Z., Reyes E., Escobar H., Chang KY, Barker A., Rockwood A., Delgado J., He X. & Jensen P. European Journal of Immunology, 47(2):314-326, 2017.

    • IF =5.422; 51/162 (IMMUNOLOGY - SCIE) 

13. Physiological and Proteomic Analysis of Cabbage Leaves in Response to High Temperature and Flooding Stresses.

    • Chang KY, Lin K-H, Lo Y-H, and Lo H-F. Research & Reviews: Journal of Botanical Sciences, 5(2), 44-53, 2016.

14. QoS-Aware Query Relaxation for Service Discovery with Business Rules.

    • Ma S-P, Chang KY, Lin J-H, Ma C-C, Lin J-H. Future Generation Computer Systems, 60, 1-12, 2016.

    • IF =7.187; 7/110 (COMPUTER SCIENCE, THEORY & METHODS  - SCIE) 

15. Identification and Phylogeny of the First T cell Epitope Identified from a Human Gut Bacteroides Species.

    • Perez-Munoz ME, Joglekar P, Shen Y-J, Chang KY, Peterson DA. PLOS ONE, 10(12), e0144382, 2015.

16. A large-scale Structural Classification of Antimicrobial Peptides. 

    • Li H-T., Li C-C., Yang J-R, Lai J. Z-C., Chang KY (*).  BioMed Research International, 2015: 475062, 2015.

    • One of the most cited papers of BioMed Research International

17. Analysis and Prediction of the critical regions of Antimicrobial Peptides based on Conditional Random Fields.

    • Chang KY (*), Lin T-P., Shih L-Y., Wang C-K.  PLOS ONE, 10(3), e0119490, 2015.

18. Analysis and Prediction of highly effective Antiviral Peptides based on Random Forests.

    • Chang KY (*), Yang J-R.  PLOS ONE, 8(8),e70166, 2013. 

19. Recognition of HLA-DQ8 β cell peptidome using a computational program and its relationship to autoreactive T cells.

    • Chang KY, Unanue ER. International Immunol, 21(6), 705-713, 2009. 

    • Featured Article 

20. Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach.

    • Zhao G., Chang KY, Varley K., Stormo GD. PLos ONE, 2(2), e262, 2007. 

21. Predicting Peptides Bound to I-Ag7 Class II Histocompatibility Molecules using a Novel Expectation-Maximization Algorithm.

    • Chang KY, Suri A, Unanue ER. Proteomics, 7(3), 367-377, 2007. 

    • Cover: Featured Article 

22. Correcting BLAST e-values for low-complexity segments. 

    • Sharon I., Birland A., Chang K., El-Yaniv R., Yona G.. Journal of Computational Biology, 12(7), 980-1003, 2005.

23. Gramene, a tool for Grass Genomics. 

    • Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, Clark KY, Teytelmen L, Schmidt SC, Zhao W, Chang K, Cartinhour S, Stein L, McCouch S. Plant Physiology, 130, 1606-1613, 2002.

24. Gramene: development and integration of trait and gene ontologies for rice.

    • Jaiswal P., Ware D., Ni J., Chang K., Zhao W., Schmidt S., Pan X., Clark K., Teytelmen L., Cartinhour S., McCouch S., Stein L.. Comparative and Functional Genomics, 30(2), 132-136, 2002.

25. Gramene: A Resource for Comparative Grass Genomics.

    • Ware D., Jaiswal P., Ni J., Pan X., Chang K., Clark K., Teytelmen L., Schmidt S., Zhao W., Cartinhour S., McCouch S., Stein L.. Nucleic Acids Research, 30(1), 103-105, 2002.