Google Scholar profile: scholar.google.com/citations?user=0iQeqGgAAAAJ&hl=en 

PREPRINTS

S. Kannan, J. Hui, K. Mazooji, L. Pachter, D. Tse, “Shannon: Information-Optimal de Novo RNA-Seq Assembler,” bioRxiv, article 039230, 2016.

JOURNAL PAPERS

K. Mazooji, I. Shomorony, “Substring Density Estimation from Traces,” IEEE Transactions on Information Theory, Volume 70, Number 8, Pages 5782-5798, August 2024.

K. Mazooji, I. Shomorony, “Fast Multiple Sequence Alignment via Multi-Armed Bandits,” Bioinformatics (Proceedings of the Conference on Intelligent Systems for Molecular Biology (ISMB)), Volume 40, Issue Supplement 1, Pages i328–i336, July 2024. (18.2% acceptance rate)

CONFERENCE PAPERS

K. Mazooji, I. Shomorony, “Guaranteed Recovery of Unambiguous Clusters,”  IEEE International Symposium on Information Theory (ISIT), Ann Arbor, Michigan, 2025.  (full version: https://arxiv.org/abs/2501.13093)

K. Mazooji, I. Shomorony, “An Instance-Based Approach to the Trace Reconstruction Problem,” 53rd Annual Conference on Information Sciences and Systems (CISS), Princeton, New Jersey, 2024.  (full version with a correction: https://arxiv.org/abs/2401.14277)

K. Mazooji, I. Shomorony, “Substring Density Estimation from Traces,” IEEE International Symposiumon Information Theory (ISIT), Taipei, Taiwan, 2023.

K. Mazooji, S. Kannan, W. Noble, I. Shomorony, “Fundamental Limits of Multi-Sample Flow Graph Decomposition,” IEEE International Symposium on Information Theory (ISIT), Helsinki, Finland, 2022. (full version: https://drive.google.com/file/d/1bA70rBYLRWaaB1wagug14Edz-IeDFTgi/view?usp=drive_link)

K. Mazooji, R. Dong, I. Shomorony, “Private DNA Sequencing: Hiding Information in Discrete Noise,” IEEE Information Theory Workshop (ITW), Riva del Garda, Italy, 2020.  (full version: https://arxiv.org/abs/2101.12124)

K. Mazooji,“On Unique Decoding from Insertion Errors,” IEEE International Symposium on Information Theory (ISIT), Aachen, Germany, 2017.  (full version: https://drive.google.com/file/d/1W6Jbxb31LtoPhweB6e-y1eJ0KWgm6-lR/view?usp=sharing)

K. Mazooji, F. Sala, G. Van den Broeck, L. Dolecek, “Robust Channel Coding Strategies for Machine Learning Data,” 54th Annual Allerton Conference on Communication, Control, and Computing, Monticello, Illinois, 2016.

F. Sala, R. Gabrys, C. Schoeny, K. Mazooji, L. Dolecek, “Exact Sequence Reconstruction for Insertion-Correcting Codes,” IEEE International Symposium on Information Theory (ISIT), Barcelona, Spain, 2016.