Journals

[21] Predicting the effect of binding molecules on the shape and mechanical properties of structured DNA assemblies

Jae Young Lee, Yanggyun Kim, and Do-Nyun Kim*

In revision

[20] DNA hydrogels with programmable condensation, expansion, and degradation for molecular carriers

Kyounghwa Jeon, Chanseok Lee, Jae Young Lee, Do-Nyun Kim*

In revision

[19] Forming superhelix of double-stranded DNA from local deformation

Heeyuen Koh*, Jae Young Lee, Jae Gyung Lee

In revision

[18] Prediction of DNA origami shape using graph neural network

Chien Truong-Quoc†, Jae Young Lee†, Kyung Soo Kim, Do-Nyun Kim* († Contributed equally)

Nature Materials (2024) [Link] [PDF]

[17] Controlling chiroptical responses via chemo-mechanical deformation of DNA origami structures

Taehwi Kim, Chanseok Lee, Jae Young Lee, Do-Nyun Kim*

ACS Nano (2024) [Link] [PDF]

[16] A computational model for structural dynamics and reconfiguration of DNA assemblies

Jae Young Lee, Heeyuen Koh, Do-Nyun Kim*

Nature Communications (2023) [Link] [PDF]

[15] Harnessing a paper-folding mechanism for reconfigurable DNA origami

Myoungseok Kim, Chanseok Lee, Kyounghwa Jeon, Jae Young Lee, Young-Joo Kim, Jae Gyung Lee, Hyunsu Kim, Maenghyo Cho, Do-Nyun Kim*

Nature (2023) (Front cover) [Link] [PDF] [Briefing]

[14] Direct visualization of floppy two-dimensional DNA origami using cryogenic electron microscopy

Heng Ni†, Xiao Fan†, Feng Zhou, Galio Guo, Jae Young Lee, Nadrian C. Seeman, Do-Nyun Kim, Nan Yao*, Paul M. Chaikin*, Yimo Han* († Contributed equally)

iScience (2022) [Link] [PDF]

[13] Formation of non-base-pairing DNA microgels using directed phase transition of amphiphilic monomers

Chanseok Lee†, Sungho Do†, Jae Young Lee, Minju Kim, Sang Moon Kim, Yongdae Shin*, Do-Nyun Kim* († Contributed equally)

Nucleic Acids Research (2022) [Link] [PDF]

[12] Predicting the free-form shape of structured DNA assemblies from their lattice-based design blueprint

Jae Gyung Lee, Kyung Soo Kim, Jae Young Lee, Do-Nyun Kim*

ACS Nano (2022) [Link] [PDF]

[11] Characterizing and harnessing the mechanical properties of short single-stranded DNA in structured assemblies

Jae Young Lee†, Myoungseok Kim†, Chanseok Lee, Do-Nyun Kim* († Contributed equally)

ACS Nano (2021) [Link] [PDF]

[10] Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules

Chanseok Lee†, Young-Joo Kim†, Kyung Soo Kim, Jae Young Lee, Do-Nyun Kim* († Contributed equally)

Nucleic Acids Research (2021) [Link] [PDF]

[9] Design approaches and computational tools for DNA nanostructures

Heeyuen Koh, Jae Gyung Lee, Jae Young Lee, Ryan Kim, Osamu Tabata, Jin-Woo Kim*, Do-Nyun Kim*

IEEE Open Journal of Nanotechnology (2021) [Link] [PDF]

[8] Programming ultrasensitive threshold response through chemo-mechanical instability

Young-Joo Kim, Junho Park, Jae Young Lee, Do-Nyun Kim*

Nature Communications (2021) [Link] [PDF]

[7] Rapid computational analysis of structured DNA assemblies at near-atomic resolution

Jae Young Lee, Jae Gyung Lee, Giseok Yun, Chanseok Lee, Young-Joo Kim, Kyung Soo Kim, Tae Hwi Kim, Do-Nyun Kim*

ACS Nano (2021) [Link] [PDF]

[6] Tailoring the mechanical stiffness of DNA nanostructures using engineered defects

Chanseok Lee†, Kyung Soo Kim†, Young-Joo Kim, Jae Young Lee, Do-Nyun Kim* († Contributed equally)

ACS Nano (2019) [Link] [PDF]

[5] Investigating the sequence-dependent mechanical properties of DNA nicks for applications in twisted DNA nanostructure design

Jae Young Lee, Young-Joo Kim, Chanseok Lee, Jae Gyung Lee, Hiromasa Yagyu, Osamu Tabata, Do-Nyun Kim*

Nucleic Acids Research (2019) [Link] [PDF]

[4] A framework of finite element procedures for the analysis of proteins

Reza Sharifi Sedeh, Giseok Yun, Jae Young Lee, Klaus-Jürgen Bathe, Do-Nyun Kim*

Computers & Structures (2018) [Link] [PDF]

[3] Polymorphic design of DNA origami structures through mechanical control of modular components

Chanseok Lee, Jae Young Lee, Do-Nyun Kim*

Nature Communications (2017) [Link] [PDF]

[2] Coarse-grained molecular dynamics model of double-stranded DNA for DNA nanostructure design

Hiromasa Yagyu*, Jae-Young Lee, Do-Nyun Kim, Osamu Tabata

Journal of Physical Chemistry B (2017) [Link] [PDF]

[1] Ignition characteristics of laser-ablated aluminum at shock pressures up to 2 GPa

Kyung-Cheol Lee, Tsubasa Taira, Goon Mo Koo, Jae Young Lee, Jack J. Yoh*

Journal of Applied Physics (2014) [Link] [PDF]