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Google scholar citations

Publications and Research Papers

Journal papers

- Valerie Chew, Liyun Lai, Lu Pan, Chun Jye Lim, Juntao Li, Raymond Ong, Camillus Chua, Jing Yao Leong, Kiat Hon Lim, Han Chong Toh, Ser Yee Lee, Chung Yip Chan, Brian Goh, Alexander Chung, Pierce Chow, and Salvatore Albani, Delineation of an immunosuppressive gradient in hepatocellular carcinoma using high-dimensional proteomic and transcriptomic analyses, PNAS, 2017. PubMed (IF: 9.661)

- Michelle Pek, Siti Yatim, Yufeng Chen, Juntao Li, Min Gong, Xia Jiang, Fan Zhang, Jie Zheng, Xiaojing Wu and Qiang Yu, Oncogenic KRAS-associated gene signature defines co-targeting of CDK4/6 and MEK as a viable therapeutic strategy in colorectal cancer, Oncogene, 2017. PubMed (IF: 7.519)

- Xia Jiang, Cheryl Zi Hui Lim, Zhimei Li, Puay Leng Lee, Siti Yatim, Peiyong Guan, Juntao Li, Jianbiao Zhou, Jingxuan Pan, Wee-Joo Chng, Christina L. L. Chai, and Qiang Yu, Functional Characterization of D9, a Novel Deazaneplanocin A (DZNep) Analog, in Targeting Acute Myeloid Leukemia (AML), PLoS One. 10(4), 2015. PubMed (IF: 3.53)

- Liyun Lai, Raymond Ong, Juntao Li and Salvatore Albani, A CD45-based barcoding approach to multiplex mass-cytometry (CyTOF), Cytometry A. 2015. PubMed (IF: 3.066)

- Jianhua Liu, Yonghui Jia, Juntao Li, Zhaoqing Chu, Transcriptional profiling analysis of individual kinase-deletion strains of fission yeast in response to nitrogen starvation. Mol Genet Genomics. 2014 Dec 21.PubMed (IF: 2.831)

- Huaien Luo*, Juntao Li*, Burton Kuan Hui Chia, Paul Robson and Niranjan Nagarajan, The importance of study design for detecting differentially abundant features in high-throughput experiments, Genome Biology, 2014, 15:527. (*Equal contributors). PubMed (IF: 10.465)

- Min Feng, Yi Bao, Zhimei Li, Juntao Li, Min Gong, Stella Lam, Jinhua Wang, Diego M. Marzese, Nicholas Donovan, Ern Yu Tan, Dave S.B. Hoon and Qiang Yu, RASAL2 activates RAC1 to promote triple-negative breast cancer progression, The Journal of Clinical Investigation, 2014. PubMed (IF: 13.765)

- Shuet Theng Lee, Min Feng, Yong Wei, Zhimei Li, Yuanyuan Qiao, Peiyong Guan, Xia Jiang, Chew Hooi Wong, Kelly Huynh, Jinhua Wang, Juntao Li, K Murthy Karuturi, Ern Yu Tan, Dave S B Hoon, Yibin Kang, Qiang Yu, Protein tyrosine phosphatase UBASH3B is overexpressed in triple-negative breast cancer and promotes invasion and metastasis. PNAS, 06/2013. PubMed (IF: 9.809)

-Jeena Gupta, Sandeep Kumar, Juntao Li, R Krishna M. Karuturi, Kulbhushan Tikoo, Histone H3 lysine 4 monomethylation (H3K4me1) and H3 lysine 9 monomethylation (H3K9me1): Distribution and their association in regulating gene expression under hyperglycaemic/hyperinsulinemic conditions in 3T3 cells, Biochimie, 2012. PubMed (IF: 3.142)

-Juntao Li, Puteri Paramita, Kwok Pui Choi and R Krishna M. Karuturi, ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates, Biology Direct, 6:27, 2011. PubMed; R code for ConReg-R (IF: 4.017)

-Juntao Li, Lei Zhu, Majid Eshaghi, Jianhua Liu and R Krishna M. Karuturi, Deciphering Transcription Factor Binding Patterns from Genome-wide High Density ChIP-chip Tiling Array Data, BMC Proceedings, 5(Suppl 2):S8, 2011. PubMed; EE

-Majid Eshaghi, Lei Zhu, Zhaoqing Chu, Juntao Li, Chee Seng Chan, Atif Shahab, R. Krishna M. Karuturi and Jianhua Liu, Deconvolution of ChIP-chip MBF occupancies reveals the temporal recruitment of Rep2 at the MBF-target genes, Eukaryotic Cell, Jan;10(1):130-41. 2011. PubMed (IF: 3.604)

-Majid Eshaghi, Jong Hoon Lee, Lei Zhu, Suk Yean Poon, Juntao Li, HyunKwang Cho, Zhaoqing Chu, R.Krishna M.Karuturi and Jianhua Liu, Genomic Binding Profiling of the Fission Yeast StressActivated MAPK Sty1 and the bZIP Transcriptional Activator Atf1 in Response to H2O2, PLoS ONE 5(7): e11620, 2010. PubMed (IF: 4.411)

-Huaien Luo, Juntao Li, Majid Eshaghi, Jianhua Liu and R.Krishna M.Karuturi, Genomewide estimation of firing efficiencies of origins of DNA replication from timecourse copy number variation data, BMC Bioinformatics, 11:247, 2010. PubMed; EE (IF: 3.028)

-Zhaoqing Chu, Juntao Li, R.Krishna M.Karuturi, Kui Lin and Jianhua Liu, Adaptive Expression Responses in the Polgamma Null Strain Depleted of Mitochondrial Genome in S-pombe, BMC Genomics, 8:323, 2007. PubMed (IF: 4.180)

-Majid Eshaghi, R.Krishna M.Karuturi, Juntao Li, Zhaoqing Chu, Edison T-Liu and Jianhua Liu, Global Profiling of DNA Replication Timing and Efficiency Reveals that Efficient Replication/ Firing Occurs Late During Sphase in Cells Released after HUblock in S-pombe, PLoS ONE 2(8): e722, 2007. PubMed (IF: 4.351)

-Zhaoqing Chu, Juntao Li, Majid Eshaghi, Xu Peng, R.Krishna M.Karuturi and Jianhua Liu, Modulation of Cell Cyclespecific Gene Expressions at the Onset of Sphase Arrest Contributes to the Robust DNA Replication Checkpoint Response in Fission Yeast, Mol Biol Cell, Vol-18, 17561767, 2007. PubMed (IF: 6.028)

-Juntao Li and Laifu Liu, Mathematical Model of Biosequence Alignment and It’s Applications, Mathematics in Practice and Theory (Chinese), Vol.35 No.1 P.511, 2005. Wan Fang

Conference full papers

-Juntao Li, Kwok Pui Choi and R Krishna M. Karuturi, Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis, in the proc. of the 8th International Symposium on Bioinformatics Research and Applications (ISBRA 2012), University of Texas at Dallas, Dallas, Texas, USA, May 21-23, 2012. EE

-Juntao Li, Lei Zhu, Majid Eshaghi, Jianhua Liu, and R Krishna M.Karuturi, Deciphering Transcription Factor Binding Patterns from Genomewide High Density ChIPchip Tiling Array Data, in the proc-of the 6th International Symposium on Bioinformatics Research and Applications (ISBRA'10), University of Connecticut, Storrs, Connecticut, USA, May 23-26, 2010. EE

-Juntao Li, Fajrian Yunus, Lei Zhu, Majid Eshaghi, Jianhua Liu and R.Krishna M.Karuturi, Modeling and Visualizing Heterogeneity of Spatial Patterns of ProteinDNA Interaction from Highdensity Chromatin Precipitation Mapping Data, in the proc-of the 5th International Symposium on Bioinformatics Research and Applications (ISBRA'09),pp236-247, Ft-Lauderdale, Florida, USA, May 13-16, 2009. EE

-Juntao Li, Jianhua Liu and R.Krishna M.Karuturi, Statistical Significance Assessment in Batch Effect Confounded Differential Expression Analysis, in the proc-of The 1st International Workshop on Optimal Data Mining in Gene Expression Analysis (ODGEA'08),ISBRA'08,pp481491, 69 May, Atlanta, Georgia, USA, 2008. EE

-Juntao Li, Majid Eshaghi, Jianhua Liu and R.Krishna M.Karuturi, NearSigmoid Modeling to simultaneously profile Genomewide DNA replication timing and Efficiency in Single DNA replication microarray studies, in the proc-of The 6th Asia Pacific Bioinformatics Conference (APBC'08), pp383392,14-17 Jan, Kyoto, Japan, 2008. EE

-Juntao Li, Jianhua Liu and R.Krishna M.Karuturi, Datadriven Smoothness Enhanced Variance Ratio Test to Unearth Responsive Genes in Unreplicated 0time Normalized Timecourse Microarray Studies, Springer Verlag Lecture Notes in Bioinformatics series for ISBRA'07,pp2536, Atlanta, Georgia, USA, May 7-10, 2007. EE

-Qian Diao, Wei Hu, Hao Zhong, Juntao Li, Feng Xue, Tao Wang and Yimin Zhang, Disease Gene Explorer: Display Disease Gene Dependency by Combining Bayesian Networks with Clustering, in the proc-of the 2004 IEEE Computational Systems Bioinformatics Conference (CSB'04):574575, in Stanford, CA, 16-19 August, 2004. EE

Book chapter

-Juntao Li, , Kwok Pui Choi, Yudi Pawitan and R. Krishna M. Karuturi, Statistical Significance Assessment for Biological Feature Selection: Methods and Issues, in Biological Knowledge Discovery Handbook, Wiley, 2014. EE

Other papers

-Juntao Li, Statistical Significance Assessment in Computational Systems Biology, PhD dissertation, 2012. Download here.

-Juntao Li, Dynamic Bayesian Network Used in Protein Sequence Analysis, Master dissertation (Chinese), 2004.

-Juntao Li, Profile HMMs Protein Analysis Using PNL, Technical Report in Intel China Research Center, 2003.

-Juntao Li, Bioinformatics: the Core Science in the 21stcentury, Bachelor dissertation (Chinese), 2001.

-Juntao Li, Wenyan Song and Chunsheng Yao, DNA Sequence Analysis, the first prize paper in China College Mathematical Contest in Modeling (Chinese), 2000.