Master's Research:
A Periphyton Sampling System
A Periphyton Sampling System
Periphyton:
“Understanding - Periphyton.”, www.lakesuperiorstreams.org
Antibiotics are a pillar of human medicine and the agricultural industry. The high usage of antibiotics increases the prevalence of antibiotic-resistant bacteria and antibiotic-resistant genes (ARGs). My collaborators at the Cleveland Metroparks Zoo are investigating ARG presence in the local watershed. ARGs are detected through water, soil, and periphyton samples; periphyton is a biofilm comprised mainly of algae which grows on submerged surfaces. These environments can be difficult to sample due to steep embankments, deeper water, or hazardous water quality. I designed a robotic sampling system to scrub periphyton off rocks, as this would increase the number of samples collected and locations which can be sampled at. To my knowledge, this is the first robotic periphyton sampling system. This research was done in the CrabLab at Case Western Reserve University under Dr. Kathryn Daltorio's advisement and with the collaboration of Dr. Patricia Dennis and MJ Camphausen.
Requirements:
Sampler must be able to physically scrape periphyton off underwater rocks
Sampling element must only be exposed during the sampling of a specific location, not before or after
The sampler must be interfaceable with our already built crab-inspired robot
Basic function:
Uses positive or negative hydraulic pressure acting on the plug to extend or retract a brush. The brush will scrub the periphyton and collect a sample. A silicone ball seals the tube when the brush is retracted. The brush will scrub a rock to dislodge periphyton when extended and collect a sample. This design keeps the system simple while fully containing the sampler. A brush-based design was used as it is a common way to manually collect periphyton in the field.
To seal the sampler I use an interference fit with a custom silicone ball. The silicone ball is attached to the plug by strings which are cast straight into the ball–they pull the ball into the tube and seal it off when the plug retracts. Sealing is important as it makes sure microbes from other locations don’t contaminate the brush. This was the simplest design I could get working on this small scale.
The silicone ball is made to be buoyant so that the ball gets out of the way of the brush when it is sampling.
The actual brushing element is interchangeable. The brush holder is 3D printed and uses nylon bristles cut from a brush to make a custom brush. This has a neodymium magnet on the end, with a second magnet inside the plug to hold the brush. This allows for multiple brushes to be swapped in and out easily in the field for the collection of multiple samples.
The silicone ball is made buoyant by casting a cavity in it. This enables the ball to float out of the way of the brush. The sphere for casting the cavity is held in place with hot glue, and breaks off easily during the de-molding process. The entrance hole from the pedestal is sealed after.
Bristles are chopped off a nylon brush so that a custom brush can be fabricated. The bristles are potted in epoxy inside the 3D printed brush holder, and capped with a magnet. The inner piece is only held in place with magnets and can be swapped out in the field.
The sampler is attached to an 18 degree of freedom crab-inspired robot (not made by me) called Tamatoa. The sampler is attached to a dactyl (or foot) of the robot, and gives the sampler 3 degrees of freedom while keeping functionality as a foot for walking. Tamatoa is controlled through ROS 2 on a Raspberry Pi running Python scripts.
This was not a design which was blindly implemented. There was a lot of testing which went into the sampler, with a large amount of that being characterization of Tamatoa's ability to sample. Environmental sampling wasn't the intended purpose for Tamatoa, finding unexploded ordinances was. However, I unfortunately cannot have all my research up here, so please reach out to me at jordanjacobgray@gmail.com if you want to hear more or if you have any questions!