Beyond RNA-binding domains: determinants of protein–RNA binding
I Zigdon, M Carmi, S Brodsky, Z Rosenwaser, N Barkai, F Jonas; RNA (2024) [pdf]

Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types
B Hurieva, DK Kumar, R Morag, O Lupo, M Carmi, N Barkai, F Jonas; Nucleic Acids Research (2024) [pdf]

ChEC-Seq: A Comprehensive Guide for Scalable and Cost-Efficient Genome-Wide Profiling in Saccharomyces cerevisiae
T Gera, DK Kumar, G Yaakov, N Barkai, F Jonas; Methods in Molecular Biology (2024) [pdf]

Nucleosome retention by histone chaperones and remodelers occludes pervasive DNA–protein binding
F Jonas, M Vidavski, E Benuck, N Barkai, G Yaakov; Nucleic Acids Research (2023) [pdf]

The molecular grammar of protein disorder guiding genome-binding locations
F Jonas, M Carmi, B Krupkin, J Steinberger, S Brodsky, T Jana, N Barkai; Nucleic Acids Research (2023) [pdf]

Complementary strategies for directing in vivo transcription factor binding through DNA binding domains and intrinsically disordered regions
DK Kumar, F Jonas, T Jana, S Brodsky, M Carmi, N Barkai; Molecular Cell (2023) [pdf]

Evolution of binding preferences among whole-genome duplicated transcription factors
T Gera, F Jonas, R More, N Barkai; ELife (2022) [pdf]