T. Midha, J. D. Mallory, A. B. Kolomeisky, and O. A. Igoshin, Synergy among Pausing, Intrinsic Proofreading, and Accessory Proteins Results in Optimal Transcription Speed and Tolerable Accuracy J. Phys. Chem. Lett. 14, 3422–3429 (2023). https://doi.org/10.1021/acs.jpclett.3c00345
J. D. Mallory and A. E. DePrince III, Reduced-density-matrix-based ab initio cavity quantum electrodynamics, Phys. Rev. A 106, 053710 (2022). https://doi.org/10.1103/PhysRevA.106.053710
J. D. Mallory, X. F. Mallory, A. B. Kolomeisky, and O. A. Igoshin, Theoretical Analysis Reveals Cost and Benefit of Proofreading in Coronavirus Genome Replication, J. Phys. Chem. Lett. 12, 2691–2698 (2021). https://doi.org/10.1021/acs.jpclett.1c00190
J. D. Mallory, O. A. Igoshin, and A. B. Kolomeisky, Do We Understand the Mechanisms used by Biological Systems to Correct their Errors? J. Phys. Chem. B 124, 9289–9296 (2020). https://doi.org/10.1021/acs.jpcb.0c06180
Q. Yu, J. D. Mallory, A. B. Kolomeisky, J. Ling, and O. A. Igoshin, Trade-Offs between Speed, Accuracy, and Dissipation in tRNAIle Aminoacylation, J. Phys. Chem. Lett. 11, 4001-4007 (2020). https://doi.org/10.1021/acs.jpclett.0c01073
J. D. Mallory, A. B. Kolomeisky, and O. A. Igoshin, Kinetic control of stationary flux ratios for a wide range of biochemical processes, Proc. Natl. Acad. Sci. USA 117, 8884-8889 (2020). https://doi.org/10.1073/pnas.1920873117
J. D. Mallory, A. B. Kolomeisky, and O. A. Igoshin, Trade-Offs between Error, Speed, Noise, and Energy Dissipation in Biological Processes with Proofreading, J. Phys. Chem. B 123, 4718 (2019). https://doi.org/10.1021/acs.jpcb.9b03757
B. H. Kohno, J. D. Mallory, and V. A. Mandelshtam, Magic numbers, quantum delocalization, and orientational disordering in anionic hydrogen and deuterium clusters, J. Chem. Phys. 150, 204305 (2019). https://doi.org/10.1063/1.5099255
J. D. Mallory and V. A. Mandelshtam, Quantum-induced solid-solid transitions and melting in the Lennard-Jones LJ38 cluster, J. Chem. Phys. 149, 104305 (2018). https://doi.org/10.1063/1.5050410
J. D. Mallory and V. A. Mandelshtam, Nuclear Quantum Effects and Thermodynamic Properties for Small (H2O)1-21X- Clusters (X-=F-, Cl-, Br-, I-), J. Phys. Chem. A 122, 4167 (2018). https://doi.org/10.1021/acs.jpca.8b00917
J. D. Mallory and V. A. Mandelshtam, Quantum Melting and Isotope Effects from Diffusion Monte Carlo Studies of p-H2 Clusters, J. Phys. Chem. A 121, 6341 (2017). https://doi.org/10.1021/acs.jpca.7b06649
J. D. Mallory and V. A. Mandelshtam, Diffusion Monte Carlo studies of MB-pol (H2O)2-6 and (D2O)2-6 clusters: Structures and binding energies, J. Chem. Phys. 145, 064308 (2016). https://doi.org/10.1063/1.4960610
J. D. Mallory and V. A. Mandelshtam, Binding energies from diffusion Monte Carlo for the MB-pol H2O and D2O dimer: A comparison to experimental values, J. Chem. Phys. 143, 144303 (2015). https://doi.org/10.1063/1.4932596
J. D. Mallory, S. E. Brown, and V. A. Mandelshtam, Assessing the Performance of the Diffusion Monte Carlo Method as applied to the Water Monomer, Dimer, and Hexamer, J. Phys. Chem. A 119, 6504 (2015). https://doi.org/10.1021/acs.jpca.5b02511
A. Otero-de-la-Roza, J. D. Mallory, and E. R. Johnson, Metallophilic interactions from dispersion-corrected density-functional theory, J. Chem. Phys. 140, 18A504 (2014). https://doi.org/10.1063/1.4862896
Postdoctoral Fellow: Center for Theoretical Biological Physics, Rice University. Research Advisors: Professor Anatoly B. Kolomeisky and Professor Oleg A. Igoshin. (August 2018-Decemeber 2020).
Graduate Research Assistant, Department of Chemistry, University of California, Irvine. Research Advisor: Professor Vladimir A. Mandelshtam. (January 2014-June 2018).
Undergraduate Research Assistant: Department of Chemistry, University of California, Merced. Research Advisor: Professor Erin R. Johnson. (August 2012-May 2013).
Undergraduate Research Assistant, Department of Chemistry, University of California, Merced. Research Advisor: Professor Erik Menke. (June-July 2012).
Undergraduate Research Assistant, Department of Chemistry, University of California, Merced. Research Advisor: Professor Meng-Lin Tsao. (January-May 2012).
