Publications

Open-source software packages at GitHub

Publication citations at Google Scholar

Comparing Fourier Transform and Direct Wave Fitting in NMR FID Data AnalysisJ Chen
2025
Visualizing Quantized Particle-Slit Interactions Through a Thought ExperimentJ ChenResearchGate (preprint not peer reviewed), DOI: 10.13140/RG.2.2.10688.03848
2025
Beyond Solution Chemistry: Mechanochemistry Enables Clustered Defects in Metal–Organic FrameworksT Plant-Collins, Z Tegudeer, DV Athapaththu, H Ringle, J Chen, WY GaoInorganic Chemistry 64 (34), 17436-17447
2025
Application and significance of SIRVB model in analyzing COVID-19 dynamicsP Ariyaratne, LP Ramasinghe, JS Ayyash, TM Kelley, TA Plant-Collins, ...Scientific Reports 15 (1), 8526
2025
A Thought on the Origin and Limit of EntropyJ ChenResearchGate Preprint (not peer reviewed), DOI: 10.13140/RG.2.2.27037.63206
2024
Dimensional Analysis of Diffusive Association Rate EquationsJ ChenAIP Advances 14 (11), 115218
2024
Recent Biomedical Applications of Carbon Quantum Dots in Cancer TreatmentJL Mowery, J ChenThe Journal of Physical Chemistry C 128 (39), 16291-1630152024
Structured stochastic curve fitting without gradient calculationJ ChenJournal of Computational Mathematics and Data Science 12, 10009722024
Measuring the Adsorption Cross-Section of YOYO-1 to Immobilized DNA MoleculesS Pandey, D Gautam, J ChenJournal of Physical Chemistry B 128 (29), 7254–726222024
Physical chemistry lab for data analysis of COVID-19 spreading kinetics in different countriesDV Athapaththu, TD Ambagaspitiya, A Chamberlain, D Demase, ...Journal of chemical education 101 (7), 2892-289852024
Reply to: On the statistical foundation of a recent single molecule FRET benchmarkM Götz, A Barth, SSR Bohr, R Börner, J Chen, T Cordes, DA Erie, ...Nature Communications 15 (1), 362682024
Constructing Wavefunctions for One-Body and Two-Body Gravitational Orbits in Classical MechanicsJ ChenarXiv preprint arXiv:2402.06109
2024
Monitoring Phase Separation and Dark Recovery in Mixed Halide Perovskite Clusters and Single Crystals Using In Situ SpectromicroscopyDV Athapaththu, ME Kordesch, J ChenThe journal of physical chemistry letters 15 (4), 1105-111172024
Quality Research Follows the Power LawH Mao, J ChenJournal of Scientometric Research 12 (3), 570-576
2023
From Particle-in-a-Box Thought Experiment to a Complete Quantum Theory?J ChenChemRxiv, Preprint that has not been peer reviewed
2023
Recital Vector Dot Operations for Chemistry StudentsJ ChenChemRxiv, Preprint (has not peer reviewed)
2023
Effect of flow rate and ionic strength on the stabilities of YOYO-1 and YO-PRO-1 intercalated in DNA moleculesD Gautam, S Pandey, J ChenThe Journal of Physical Chemistry B 127 (11), 2450-245662023
Why Should the Reaction Order of a Bimolecular Reaction be 2.33 Instead of 2?J ChenThe Journal of Physical Chemistry A 126 (51), 9719-97256*2022
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectoriesM Götz, A Barth, SSR Bohr, R Börner, J Chen, T Cordes, DA Erie, ...Nature Communications 13, 5402602022
Teaching undergraduate physical chemistry lab with kinetic analysis of COVID-19 in the United StatesDK Smith, K Lauro, D Kelly, J Fish, E Lintelman, D McEwen, C Smith, ...Journal of Chemical Education 99 (10), 3471-347782022
In‐situ ellipsometry measurements on the halide phase segregation of mixed halide lead perovskitesA Bernhardt, TD Ambagaspitiya, ME Kordesch, KLA Cimatu, J ChenChemPhysChem 23 (15), e20220002222022
Influence of Lead Source on the Film Morphology of Perovskites Spin-Coated on Planar and Mesoporous Architectures under Ambient ConditionsJR Vicente, WM Jadwisienczak, S Kaya, J ChenJournal of Electronic Materials 51 (4), 1623-1631
2022
Simulating stochastic adsorption of diluted solute molecules at interfacesJ ChenAIP Advances 12 (1), 015318132022
Stabilization of mixed-halide lead perovskites under light by photothermal effectsJR Vicente, ME Kordesch, J ChenJournal of Energy Chemistry 63, 8-11152021
Remote Learning of COVID-19 Kinetic Analysis in a Physical Chemistry Laboratory ClassK Hart, C Thompson, C Burger, D Hardwick, A Michaud, AHM Al Bulushi, ...ACS Omega 6 (43), 29223-2923272021
Ellipsometry Study of CdSe Thin Films Deposited by PLD on ITO Coated Glass SubstratesFPN Inbanathan, P Kumar, K Dasari, RS Katiyar, J Chen, ...Materials 14 (12), 3307152021
Cyanine-Based Polymer Dots with Long-Wavelength Excitation and Near-Infrared Fluorescence beyond 900 nm for In Vivo Biological ImagingMH Liu, TC Chen, JR Vicente, CN Yao, YC Yang, CP Chen, PW Lin, ...ACS Applied Bio Materials 3 (6), 3846–3858152020
Phase Segregation and Photothermal Remixing of Mixed-Halide Lead PerovskitesJR Vicente, J ChenThe Journal of Physical Chemistry Letters 11 (5), 1802-1807392020
Time-resolved temperature-jump measurements and steady-state thermal imaging of nanoscale heat transfer of gold nanostructures on AlGaN: Er3+ thin filmsK Shrestha, JR Vicente, AR Miandashti, J Chen, HH RichardsonThe Journal of Chemical Physics 152 (3)12020
Reusable Chemically-Micropatterned Substrates via Sequential Photoinitiated Thiol-Ene Reactions as Template for Perovskite Thin-Film MicroarraysKWES Piecco, JR Vicente, JR Pyle, DC Ingram, ME Kordesch, J ChenACS Appl. Electron. Mater. 1 (11), 2279-228662019
In-situ Sensing of Reactive Oxygen Species on Dye-Stained Single DNA Molecules under IlluminationJR Pyle, KWE Sy Piecco, JR Vicente, J ChenLangmuir 35 (35), 11308-1131472019
Single-Particle Organolead Halide Perovskite Photoluminescence as a Probe for Surface Reaction KineticsJR Vicente, A Rafiei Miandashti, KWE Sy Piecco, JR Pyle, ME Kordesch, ...ACS applied materials & interfaces 11 (19), 18034-18043262019
Single molecule protein patterning using hole mask colloidal lithographyW Lum, D Gautam, J Chen, LB SagleNanoscale 11, 16228-16234152019
Molecular Design of Near-Infrared Fluorescent Pdots for Tumor Targeting: Aggregation-Induced Emission versus Anti-Aggregation-Caused QuenchingWK Tsai, CI Wang, CH Liao, CN Yao, TJ Kuo, MH Liu, CP Hsu, SY Lin, ...Chemical Science 10, 198-207762019
Ultrafast transient absorption spectra of photoexcited YOYO-1 molecules call for additional investigations of their fluorescence quenching mechanismL Wang, JR Pyle, KLA Cimatu, J ChenJournal of Photochemistry and Photobiology A: Chemistry 367, 411-419112018
Kinetic Model under Light-Limited Condition for Photoinitiated Thiol–Ene Coupling ReactionsKWES Piecco, AM Aboelenen, JR Pyle, JR Vicente, D Gautam, J ChenACS Omega 3 (10), 14327-14332252018
Successive Surface Reactions on Hydrophilic Silica for Modified Magnetic Nanoparticle Attachment Probed by Sum-Frequency Generation SpectroscopyJ Nonkumwong, UJ Erasquin, KW Sy Piecco, UI Premadasa, ...Langmuir 34 (43), 12680-12693182018
Influence of Defects on the Reactivity of Organic SurfacesGJ Deye, JR Vicente, J Chen, JW CiszekThe Journal of Physical Chemistry C 122 (27), 15582–1558792018
Optical Genome MappingJR Pyle, KWES Piecco, JR Vicente, J ChenEncyclopedia of Chemical Processing (Online), DOI: 10.1081/E-ECHP-140000148
2018
Perovskite Solar CellsJR Vicente, J ChenEncyclopedia of Chemical Processing (Online), DOI: 10.1081/E-ECHP-14000032812018
Photobleaching of YOYO-1 in super-resolution single DNA fluorescence imagingJR Pyle, J ChenBeilstein Journal of Nanotechnology 8 (1), 2296-2306222017
The Role of Thermal Activation and Molecular Structure on the Reaction of Molecular SurfacesGJ Deye, JR Vicente, SM Dalke, S Piranej, J Chen, JW CiszekLangmuir 33 (33), 8140-814692017
Molecular Engineering and Design of Semiconducting Polymer Dots with Narrow-Band, Near-Infrared Emission for in Vivo Biological ImagingCS Ke, CC Fang, JY Yan, PJ Tseng, JR Pyle, CP Chen, SY Lin, J Chen, ...ACS nano 11 (3), 3166-31771332017
A Two-Step Method for smFRET Data AnalysisJ Chen, JR Pyle, KW Sy Piecco, AB Kolomeisky, CF LandesThe Journal of Physical Chemistry B 120 (29), 7128–7132262016
Tunable interfaces on tetracene and pentacene thin-films via monolayersS Piranej, DA Turner, SM Dalke, H Park, BA Qualizza, J Vicente, J Chen, ...CrystEngComm 18, 6062-6068152016
Conformational Transitions in the Glycine-Bound GluN1 NMDA Receptor LBD via Single-Molecule FRETDR Cooper, DM Dolino, H Jaurich, B Shuang, S Ramaswamy, CE Nurik, ...Biophysical journal 109 (1), 66-75412015
Single-Molecule FRET Studies of HIV TAR–DNA Hairpin Unfolding DynamicsJ Chen, NK Poddar, LJ Tauzin, D Cooper, AB Kolomeisky, CF LandesThe Journal of Physical Chemistry B 118 (42), 12130-12139322014
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data AnalysisB Shuang, D Cooper, JN Taylor, L Kisley, J Chen, W Wang, CB Li, ...The journal of physical chemistry letters 5 (18), 3157-31611152014
Charge-Dependent Transport Switching of Single Molecular Ions in a Weak Polyelectrolyte MultilayerLJ Tauzin, B Shuang, L Kisley, AP Mansur, J Chen, A de Leon, ...Langmuir 30 (28), 8391-8399362014
High ionic strength narrows the population of sites participating in protein ion-exchange adsorption: A single-molecule studyL Kisley, J Chen, AP Mansur, S Dominguez-Medina, E Kulla, MK Kang, ...Journal of Chromatography A 1343, 135-142572014
Unified superresolution experiments and stochastic theory provide mechanistic insight into protein ion-exchange adsorptive separationsL Kisley, J Chen, AP Mansur, B Shuang, K Kourentzi, MV Poongavanam, ...Proceedings of the National Academy of Sciences 111 (6), 2075-20801002014
Troika of single particle tracking programing: SNR enhancement, particle identification, and mappingB Shuang, J Chen, L Kisley, CF LandesPhysical Chemistry Chemical Physics 16 (2), 624-634762014
Super-Resolution mbPAINT for Optical Localization of Single-Stranded DNAJ Chen, A Bremauntz, L Kisley, B Shuang, CF LandesACS applied materials & interfaces 5 (19), 9338-9343522013
Molecular Adsorption on ZnO (101̅0) Single-Crystal Surfaces: Morphology and Charge TransferJ Chen, RE Ruther, Y Tan, LM Bishop, RJ HamersLangmuir 28 (28), 10437-10445752012
Formation of Self-Assembled Monolayers of π-Conjugated Molecules on TiO2 Surfaces by Thermal Grafting of Aryl and Benzyl HalidesCR English, LM Bishop, J Chen, RJ HamersLangmuir 28 (17), 6866-6876152012
Deflected capillary force lithographyY Cai, Z Zhao, J Chen, T Yang, PS CremerACS nano 6 (2), 1548-1556282012
Formation of molecular monolayers on TiO2 surfaces: A surface analogue of the Williamson ether synthesisJ Chen, R Franking, RE Ruther, Y Tan, X He, SR Hogendoorn, ...Langmuir 27 (11), 6879-6889352011
Nanofabrication, plasmon enhanced fluorescence and photo-oxidation kinetics of CdSe nanoparticlesJ ChenTEXAS A&M UNIVERSITY32010
Ultrasensitive copper (II) detection using plasmon-enhanced and photo-brightened luminescence of CdSe quantum dotsYH Chan, J Chen, Q Liu, SE Wark, DH Son, JD BatteasAnalytical chemistry 82 (9), 3671-36783052010
Spatially selective optical tuning of quantum dot thin film luminescenceJ Chen, YH Chan, T Yang, SE Wark, DH Son, JD BatteasJournal of the American Chemical Society 131 (51), 18204-18205282009
Benchtop chemistry for the rapid prototyping of label-free biosensors: transmission localized surface plasmon resonance platformsWS Liao, X Chen, T Yang, ET Castellana, J Chen, PS CremerBiointerphases 4 (4), 80-85222009
Using patterned arrays of metal nanoparticles to probe plasmon enhanced luminescence of CdSe quantum dotsYH Chan, J Chen, SE Wark, SL Skiles, DH Son, JD BatteasAcs Nano 3 (7), 1735-17441532009
Evaporation-induced assembly of quantum dots into nanoringsJ Chen, WS Liao, X Chen, T Yang, SE Wark, DH Son, JD Batteas, ...ACS nano 3 (1), 173-1801982009
Size-Dependent Hydrogenation Selectivity of Nitrate on Pd−Cu/TiO2 CatalystsF Zhang, S Miao, Y Yang, X Zhang, J Chen, N GuanThe Journal of Physical Chemistry C 112 (20), 7665-76711012008
Sub-100 nm patterning of supported bilayers by nanoshaving lithographyJ Shi, J Chen, PS CremerJournal of the American Chemical Society 130 (9), 2718-27191142008
Templating water stains for nanolithographyWS Liao, X Chen, J Chen, PS CremerNano letters 7 (8), 2452-2458262007
Selective catalytic reduction of nitric oxide with propane over Ni-Al 2 O 3: effect of Ni loadingS Zhang, L Li, B Xue, J Chen, N Guan, F ZhangReaction Kinetics and Catalysis Letters 89, 81-87162006
Ni-Al2O3 催化剂焙烧温度对丙烷催化还原 NO 反应性能的影响张淑娟，章福祥，李兰冬，陈继新，关乃佳分子催化 20 (005), 446-44872006
Para-selectivity of modified HZSM-5 zeolites by nitridation for ethylation of ethylbenzene with ethanolX Guan, N Li, G Wu, J Chen, F Zhang, N GuanJournal of Molecular Catalysis A: Chemical 248 (1-2), 220-225452006
Direct synthesis of zeolite coatings on cordierite supports by in situ hydrothermal methodL Li, B Xue, J Chen, N Guan, F Zhang, D Liu, H FengApplied Catalysis A: General 292, 312-321832005
HZSM-5 的氮化及其在乙苯与乙醇烷基化反应中的应用关新新，李娜，武光军，章福祥，陈继新，关乃佳催化学报 26 (8), 63452005
Nitridation of HZSM25 and Its Application in Ethylation of Ethylbenzene with Ethanol to Para2diethylbenzeneX GUAN, N LI, G WU, F ZHANG, J CHEN, N GUAN催化学报32005
High photocatalytic activity and selectivity for nitrogen in nitrate reduction on Ag/TiO2 catalyst with fine silver clustersF Zhang, R Jin, J Chen, C Shao, W Gao, L Li, N GuanJournal of catalysis 232 (2), 424-4313272005
Selective catalytic reduction of nitrogen oxides from exhaust of lean burn engine over in-situ synthesized Cu-ZSM-5/cordieriteL Landong, C Jixin, Z Shujuan, Z Fuxiang, G Naijia, W Tianyou, ...Environmental science & technology 39 (8), 2841-2847552005
selective catalytic reduction of nitrogen oxides over Cu-TS-1/cordierite and LaCu-TS-1/cordieriteL Li, J Chen, S Zhang, N Guan, T Wang, S LiuReaction Kinetics and Catalysis Letters 84, 115-12062005
In-situ Synthesis of Binderless ZSM-5 Zeolitic Coatings on AluminumLI Lan Dong, C Ji Xin, NJG Shu Juan ZHANGChinese Chemical Letters 16 (2), 253-256
2005
Improving the Si/Al ratio of zeolite omega by boron adulterationJ Chen, E Liu, Y Song, L Li, S Zhang, N GuanStudies in Surface Science and Catalysis 154, 217-223
2004
Study on metal-MFI/cordierite as promising catalysts for selective catalytic reduction of nitric oxide by propane in excess oxygenL Li, J Chen, S Zhang, N Guan, M Richter, R Eckelt, R FrickeJournal of Catalysis 228 (1), 12-22562004
Interaction among metal, promoter and support over cesium/active carbon-promoted ruthenium-based catalyst for ammonia synthesisS Wu, CM Zheng, JX Chen, XF Zheng, HS Zeng, NJ GuanCHINESE JOURNAL OF CATALYSIS 25 (11), 873-877
2004
Preparation and characterization of boron-doping ruthenium catalysts for ammonia synthesisS Wu, X Zheng, J Chen, H Zeng, N GuanCatalysis Communications 5 (10), 639-64262004
Synthesis of titania-supported platinum catalyst: the effect of pH on morphology control and valence state during photodepositionF Zhang, J Chen, X Zhang, W Gao, R Jin, N Guan, Y LiLangmuir 20 (21), 9329-93341662004
Dealumination process of zeolite omega monitored by 27Al 3QMAS NMR spectroscopyJ Chen, T Chen, N Guan, J WangCatalysis today 93, 627-630442004
Simple and low-cost preparation method for highly dispersed Pd/TiO2 catalystsF Zhang, J Chen, X Zhang, W Gao, R Jin, N GuanCatalysis today 93, 645-650502004
Catalytic reduction of nitrite ions in drinking water over Pd–Cu/TiO2 bimetallic catalystW Gao, J Chen, X Guan, R Jin, F Zhang, N GuanCatalysis Today 93, 333-339632004
TS-1 催化剂上氢气还原一氧化氮的研究李兰冬，陈继新，张淑娟，关乃佳
2004
Selective catalytic reduction of nitrogen oxides from exhaust of lean burn engine over in situ synthesized monolithic Cu–TS-1/cordieriteL Li, J Chen, S Zhang, N Guan, T Wang, S LiuCatalysis today 90 (3-4), 207-213492004
Titania-supported bimetallic catalysts for photocatalytic reduction of nitrateW Gao, R Jin, J Chen, X Guan, H Zeng, F Zhang, N GuanCatalysis today 90 (3-4), 331-3361762004
Photocatalytic reduction of nitrate ion in drinking water by using metal-loaded MgTiO3-TiO2 composite semiconductor catalystR Jin, W Gao, J Chen, H Zeng, F Zhang, Z Liu, N GuanJournal of Photochemistry and Photobiology A: Chemistry 162 (2-3), 585-5901232004
含氮 SAPO-34 分子筛的合成及表征关新新，武光军，蒋绍亮，宋英俊，陈继新，关乃佳石油化工, 822-82312004
原位合成 SAPO-34/堇青石整体式催化剂张淑娟，陈继新，李兰冬，关新新，关乃佳石油化工, 103-105
2004
饮用水中硝酸根的催化还原研究进展高文亮，关新新，金瑞彩，陈继新，雷博，刘智广，章福祥，关乃佳环境污染治理技术与设备 5 (5), 1-542004
用乙二醇为介质制备纳米氧化镁吴山，郑兴芳，陈继新，曾海生，关乃佳南开大学学报: 自然科学版 37 (003), 73-77182004
Study on the Interaction Between Hypocrellin A and Myoglobin Using Spectral Methods [J]吴山，郑兴芳，陈继新，曾海生，关乃佳Acta Scientiarun Naturaltium Universitatis Nankaiensis 3
2004
Cs/活性炭促进的 Ru 基合成氨催化剂中金属, 助剂和载体间的相互作用吴山，郑春明，陈继新，郑兴芳，曾海生，关乃佳催化学报 25 (011), 873-87742004
Novel preparation of nanocrystalline magnesia-supported caesium-promoted ruthenium catalyst with high activity for ammonia synthesisS Wu, J Chen, X Zheng, H Zeng, C Zheng, N GuanChemical Communications, 2488-248982003
Titania supported Pd-Cu bimetallic catalyst for the reduction of nitrate in drinking waterW Gao, N Guan, J Chen, X Guan, R Jin, H Zeng, Z Liu, F ZhangApplied Catalysis B: Environmental 46 (2), 341-3512432003
Titania-supported Pd–Cu bimetallic catalyst for the reduction of nitrite ions in drinking waterW Gao, R Jin, J Chen, X Guan, H Zeng, F Zhang, Z Liu, N GuanCatalysis letters 91, 25-30202003
Preparation and Characterization of Ag/TiO~ 2 Nanoparticle Catalyst and Its Photocatalytic ActivityF Zhang, X Zhang, J Chen, Z Liu, W Gao, R Jin, N GuanChinese Journal of Catalysis 24 (11), 877-88082003
Control of morphology of silver clusters coated on titanium dioxide during photocatalysisF Zhang, N Guan, Y Li, X Zhang, J Chen, H ZengLangmuir 19 (20), 8230-82341122003
Ag/TiO2 复合纳米催化剂的制备和表征及其光催化活性章福祥，张秀，陈继新，刘智广，高文亮，金瑞彩，关乃佳催化学报 24 (11), 877-880312003
含硼沸石分子筛的 NMR 表征陈继新，王敬中，孙平川，陈铁红，曾海生，关乃佳第十二届全国波谱学学术会议论文摘要集
2002
Studies on Cu-containing MFI zeolites by H-2-TPR and O-2-TPDXL Shan, NJ Guan, X Zeng, JX Chen, SH XiangChinese Journal of Catalysis 22 (3), 237-241132001
含铜 MFI 分子筛的 H2—TPR 和 O2—TPD 研究单学蕾，关乃佳，曾翔，陈继新，项寿鹤催化学报 22 (003), 237-241142001
NK-101 分子筛的合成及表征陈继新，关乃佳，陈铁红，王敬中，李宝会，孙平川高等学校化学学报, 192-195
2001

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