Publications
2024
Severino, L., Kim, J., Nam, M. H., & McHugh, T. J. (2024). From synapses to circuits: What mouse models have taught us about how autism spectrum disorder impacts hippocampal function. Neuroscience & Biobehavioral Reviews, 105559.
Kim, J., Jeon, H., Feng, L. … and Kim, J.*. eLemur: A cellular-resolution 3D atlas of the mouse lemur brain. (in preparation)
Shin, J., Jeon, H., Kim, J, Kim, J.* “Spatiotemporal dynamics of functional clusters in basal ganglia neural circuits”, (In Preparation)
Choi, Y., Kim, Jayoung, Jeon, H., Kim, J., Kim, J.*. “Mapping Brain-wide Excitatory/Inhibitory Input Patterns Throughout the Mouse Lifespan”, (In Preparation)
2023
Manubens-Gil L., Zho, Z., Chen H., Ramanathan A., Liu X., Liu Y., ...Kim, J, ... & Peng, H. (2023). BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets. Nature Methods, 1-12.
2022
Jeon, H., Lee, H., Kwon, D. H., Kim, J., Tanaka-Yamamoto, K., Yook, J. S., ... & Kim, J.* (2022). Topographic connectivity and cellular profiling reveal detailed input pathways and functionally distinct cell types in the subthalamic nucleus. Cell Reports, 38(9), 110439.
Baek S-J, Park, J.S., Kim J, Yamamoto Y, and Tanaka-Yamamoto K (2022). VTA-projecting cerebellar neurons mediate stress-dependent depression-like behaviors. Elife, 11, e72981.
Lee B. H, Shim J.Y , Moon H. C, Kim D. W, Kim J, Yook J. S, Kim J and Park H Y (2022). Real-time visualization of mRNA synthesis during memory formation in live mice. PNAS
2021
Yook JS, Kim J, Lim D and Kim J* (2021). Convergence circuit mapping: From structure to function. Frontiers in Systems Neuroscience, 15, 57.
2020
Choi JE, Kim J, and Kim J* (2020). Capturing activated neurons and synapses. Neuroscience Research 152, 25-34
Tahk D, Bang S, Hyung S, Lim J, Yu J, Kim J, Jeon N, and Kim H (2020). Self-detachable UV-curable polymers for open-access microfluidic platforms. Lab on a Chip DOI: 10.1039/d0lc00604a
2019
Feng, L*., Song, J. H., Kim, J., Jeong, S., Park, J. S., and Kim, J*. (2019). Robust Nucleus Detection With Partially Labeled Exemplars. IEEE Access, 7, 162169-162178.
Lee J-H, Latchoumane C, Park J, Kim J, Jeong J, Lee K H, and Shin H-S (2019). The rostroventral part of the thalamic reticular nucleus modulates fear extinction. Nature communications, 10(1), 1-12.
Park H, Kim T, Kim J., Yamamoto Y, and Tanaka-Yamamoto K. (2019). Requirement of inputs from sequentially developed parallel fibers for cerebellar organization. Cell Reports 28(11), 2939-2954.e5
2018
Song J, Lucaci D, Calangiu I, Park J, Kim J, Brickley S, and Chadderton P. (2018). Combining mGRASP and optogenetics enables high-resolution functional mapping of descending cortical projections. Cell Reports 24(4), 1071-1080
Kwon O, Feng L, Druckmann S, and Kim J* (2018). Schaffer collateral inputs to CA1 excitatory and inhibitory neurons follow different connectivity rules. Journal of Neuroscience 38(22), 5140-5152
2016
Na S, Kang M, Bnag S, Park D, Kim J, Sim S, Chang S, and Jeon N. (2016). Microfluidic neural axon diode. Technology 4(4), 240-248
Lee H, Oh W.C, Seong J, and Kim J* (2016). Advanced fluorescent protein-based synapse detectors. Frontiers in Synaptic Neuroscience Volume 8, Article 16: doi: 10.3389/fnsyn.2016.00016
Gangadharan G, Shin J, Kim S, Kim A, Paydar A, Kim DS, Miyazaki T, Watanabe M, Yanagawa Y, Kim J, Kim YS, Kim D, and Shin HS. (2016). Medial septal GABAergic projection neurons promote object exploration behavior and type 2 theta rhythm. Proc Natl Acad Sci U S A 113(23): 6550-5
Bang S, Na S, Jang J M, Kim J and Jeon N L. (2016). Engineering-Aligned 3D Neural Circuit in Microfluidic Device . Advanced Healthcare Materials 5(1):159-66 DOI: 10.1002/adhm.201500397
2015
Rah J-C, Feng L, Druckmann S, Hojin Lee and Kim J* (2015). From meso- to micro-scale connectome: Array Tomography and mGRASP. Frontiers in Neuroanatomy 9, Article 78, 1-12
Feng L, Zhao T, and Kim J* (2015). neuTube 1.0: A new design for efficient neuron reconstruction software based on the SWC format. eNeuro 2(1) e0049-14.2014 1-0
2014
Feng L, Kwon O, Lee B, Oh W, and Kim J* (2014). Using mammalian GFP reconstitution across synaptic partners (mGRASP) to map synaptic connectivity in the mouse brain. Nature Protocols 9, 2425-2437
Druckmann S, Feng L, Lee B, Yook C, Zhao T, Magee J.C., and Kim J* (2014). Structured synaptic connectivity between hippocampal regions. Neuron 81, 1-12
2013
Yook C, Druckmann S, and Kim J* (2013). Mapping synaptic connectivity. Cellular Molecular Life Science 70:4747-4757, DOI 10.1007/s00018-013-1417-y
2012
Feng L, Zhao T, and Kim J* (2012). Improved synapse detection for mGRASP-assistant connectivity mapping. Bioinformatics 28(12):25-31
Royer S, Zemelman B.V, Losonczy A, Kim J, Chance F, Magee J.C, & Buzsaki G. (2012). Control of timing, rate, and bursts of hippocampal place cells by dendritic and perisomatic inhibition. Nature Neuroscience 15(5), 769-775
Kim J*, Zhao T*, Petralia R, Yu Y, Peng H, Myers E & Magee J. (2012). mGRASP enables mapping synaptic connectivity with light microscopy. Nature Methods 9(1), 96-102
2011
Jung SC, Eun SY, Kim J & Hoffman DA. (2011) Kv4.2 block of long term potentiation is partially dependent on synaptic NMDA receptor remodeling. Brain Research Bulletin 84, 17-21
2010
Wörtge S, Eshkind L, Cabezas-Wallscheid N, Lakaye B, Kim J, Heck R, Abassi, Diken M, Sprengel R & Bockamp E. (2010). Tetracycline-controlled transgene activation with the GFP-equipped ROSA26-iM2 mouse allows conditional mosaic expression in mice. BMC Developmental Biology 10, 95
Mertz J & Kim J (2010). Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection. Journal of Biomedical Optics 15(1), 016027
2008
Kim J* & Hoffman DA. (2008). Potassium channels: newly found players in synaptic plasticity. Neuroscientist 14, 276-286.
Jung SC, Kim J & Hoffman DA. (2008). Rapid, bidirectional remodeling of synaptic NMDA receptor subunit composition by A-type K+ channel activity in hippocampal CA1 pyramidal neurons. Neuron 60, 657-671.
Kim J, Nadal M, Clemens AM, Baron M, Jung SC, Misumi Y, Rudy B & Hoffman DA. (2008). The Kv4 accessory protein DPPX is a critical regulator of membrane excitability in hippocampal CA1 pyramidal neurons. J Neurophysiol. 100, 1835-1847.
2007
Kim J*, Jung SC, Clemens AM, Petralia RS & Hoffman DA. (2007). Regulation of dendritic excitability by activity-dependent trafficking of the A-type K+ channel subunit Kv4.2 in hippocampal neurons. Neuron 54, 933-947.
2005
Kim J, Wei DS & Hoffman DA. (2005). Kv4 potassium channel subunits control action potential repolarization and frequency-dependent broadening in rat hippocampal CA1 pyramidal neurones. J Physiol 569, 41-57.
Shimshek DR, Bus T, Kim J, Mihaljevic A, Mack V, Seeburg PH, Sprengel R & Schaefer AT. (2005). Enhanced odor discrimination and impaired olfactory memory by spatially controlled switch of AMPA receptors. PLoS Biol 3, e354.
2004
Kim J, Dittgen T, Nimmerjahn A, Waters J, Pawlak V, Helmchen F, Schlesinger S, Seeburg PH & Osten P. (2004). Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. J Neurosci Methods 133, 81-90.
Krestel HE, Shimshek DR, Jensen V, Nevian T, Kim J, Geng Y, Bast T, Depaulis A, Schonig K, Schwenk F, Bujard H, Hvalby O, Sprengel R & Seeburg PH. (2004). A genetic switch for epilepsy in adult mice. J Neurosci 24, 10568-10578.
Schulz TW, Nakagawa T, Licznerski P, Pawlak V, Kolleker A, Rozov A, Kim J, Dittgen T, Kohr G, Sheng M, Seeburg PH & Osten P. (2004). Actin/alpha-actinin-dependent transport of AMPA receptors in dendritic spines: role of the PDZ-LIM protein RIL. J Neurosci 24, 8584-8594.
~2002
Shimshek DR, Kim J, Hubner MR, Spergel DJ, Buchholz F, Casanova E, Stewart AF, Seeburg PH & Sprengel R. (2002). Codon-improved Cre recombinase (iCre) expression in the mouse. Genesis 32, 19-26.
Anastassiadis K, Kim J, Daigle N, Sprengel R, Scholer HR & Stewart AF. (2002). A predictable ligand regulated expression strategy for stably integrated transgenes in mammalian cells in culture. Gene 298, 159-172.
Kim J, Shin S-H, Cho S-H & Lee W-S. (2000). DNA endonuclease- and active oxygen- associated degradation of chloroplast DNA in response to paraquat-induced oxidative stress. J Plant Biology 43, 226-231.
Hur GH, Kim YB, Choi DS, Kim J & Shin S. (1998). Apoptosis as a mechanism of 2- chloroethylethyl sulfide-induced cytotoxicity. Chem Biol Interact 110, 57-70.
Kim J, Park EJ, Lee TK & Lee WS. (1996). Genomic sequences of the Soybean 24 kDa Oleosin genes and initial analysis of their promoter sequences. Mol Cells 6, 393-399.