• Lee H, Jeon H, Kwon D-H, Kim J, Tanaka-Yamamoto K, Feng L, Park H, Lim YH, Cho Z-H, Paek SH, and Kim J* (2021). Connectivity and cellular profiles of the sub thalamic nucleus associated with the effects of deep brain stimulation. Science Translational Medicine (under revision)

  • Kim J, Jeon H, Feng L … and Kim J* (2021). eLemur: A cellular-resolution 3D atlas of the mouse lemur brain. Science advance (in preparation)

  • Yook JS, Kim J, Lim D and Kim J* (2021). Convergence circuit mapping: From structure to function. Frontiers in system neuroscience (invited)

  • Baek S-J, Kim J, Yamamoto Y, and Tanaka-Yamamoto K (2021). The cerebelum-VTA circuit mediates stress-dependent depressive symptoms. Cell reports (under revision)


  • Choi JE, Kim J, and Kim J* (2020). Capturing activated neurons and synapses. Neuroscience Research 152, 25-34

  • Tahk D, Bang S, Hyung S, Lim J, Yu J, Kim J, Jeon N, and Kim H (2020). Self-detachable UV-curable polymers for open-access microfluidic platforms. Lab on a Chip DOI: 10.1039/d0lc00604a


  • Feng, L*., Song, J. H., Kim, J., Jeong, S., Park, J. S., and Kim, J*. (2019). Robust Nucleus Detection With Partially Labeled Exemplars. IEEE Access, 7, 162169-162178.

  • Lee J-H, Latchoumane C, Park J, Kim J, Jeong J, Lee K H, and Shin H-S (2019). The rostroventral part of the thalamic reticular nucleus modulates fear extinction. Nature Communications (in press)

  • Park H, Kim T, Kim J., Yamamoto Y, and Tanaka-Yamamoto K. (2019). Requirement of inputs from sequentially developed parallel fibers for cerebellar organization. Cell Reports 28(11), 2939-2954.e5


  • Song J, Lucaci D, Calangiu I, Park J, Kim J, Brickley S, and Chadderton P. (2018). Combining mGRASP and optogenetics enables high-resolution functional mapping of descending cortical projections. Cell Reports 24(4), 1071-1080

  • Kwon O, Feng L, Druckmann S, and Kim J* (2018). Schaffer collateral inputs to CA1 excitatory and inhibitory neurons follow different connectivity rules. Journal of Neuroscience 38(22), 5140-5152


  • Na S, Kang M, Bnag S, Park D, Kim J, Sim S, Chang S, and Jeon N. (2016). Microfluidic neural axon diode. Technology 4(4), 240-248

  • Lee H, Oh W.C, Seong J, and Kim J* (2016). Advanced fluorescent protein-based synapse detectors. Frontiers in Synaptic Neuroscience Volume 8, Article 16: doi: 10.3389/fnsyn.2016.00016

  • Gangadharan G, Shin J, Kim S, Kim A, Paydar A, Kim DS, Miyazaki T, Watanabe M, Yanagawa Y, Kim J, Kim YS, Kim D, and Shin HS. (2016). Medial septal GABAergic projection neurons promote object exploration behavior and type 2 theta rhythm. Proc Natl Acad Sci U S A 113(23): 6550-5

  • Bang S, Na S, Jang J M, Kim J and Jeon N L. (2016). Engineering-Aligned 3D Neural Circuit in Microfluidic Device . Advanced Healthcare Materials 5(1):159-66 DOI: 10.1002/adhm.201500397


  • Rah J-C, Feng L, Druckmann S, Hojin Lee and Kim J* (2015). From meso- to micro-scale connectome: Array Tomography and mGRASP. Frontiers in Neuroanatomy 9, Article 78, 1-12

  • Feng L, Zhao T, and Kim J* (2015). neuTube 1.0: A new design for efficient neuron reconstruction software based on the SWC format. eNeuro 2(1) e0049-14.2014 1-0


  • Feng L, Kwon O, Lee B, Oh W, and Kim J* (2014). Using mammalian GFP reconstitution across synaptic partners (mGRASP) to map synaptic connectivity in the mouse brain. Nature Protocols 9, 2425-2437

  • Druckmann S, Feng L, Lee B, Yook C, Zhao T, Magee J.C., and Kim J* (2014). Structured synaptic connectivity between hippocampal regions. Neuron 81, 1-12


  • Yook C, Druckmann S, and Kim J* (2013). Mapping synaptic connectivity. Cellular Molecular Life Science 70:4747-4757, DOI 10.1007/s00018-013-1417-y


  • Feng L, Zhao T, and Kim J* (2012). Improved synapse detection for mGRASP-assistant connectivity mapping. Bioinformatics 28(12):25-31

  • Royer S, Zemelman B.V, Losonczy A, Kim J, Chance F, Magee J.C, & Buzsaki G. (2012). Control of timing, rate, and bursts of hippocampal place cells by dendritic and perisomatic inhibition. Nature Neuroscience 15(5), 769-775

  • Kim J*, Zhao T*, Petralia R, Yu Y, Peng H, Myers E & Magee J. (2012). mGRASP enables mapping synaptic connectivity with light microscopy. Nature Methods 9(1), 96-102


  • Jung SC, Eun SY, Kim J & Hoffman DA. (2011) Kv4.2 block of long term potentiation is partially dependent on synaptic NMDA receptor remodeling. Brain Research Bulletin 84, 17-21


  • Wörtge S, Eshkind L, Cabezas-Wallscheid N, Lakaye B, Kim J, Heck R, Abassi, Diken M, Sprengel R & Bockamp E. (2010). Tetracycline-controlled transgene activation with the GFP-equipped ROSA26-iM2 mouse allows conditional mosaic expression in mice. BMC Developmental Biology 10, 95

  • Mertz J & Kim J (2010). Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection. Journal of Biomedical Optics 15(1), 016027


  • Kim J* & Hoffman DA. (2008). Potassium channels: newly found players in synaptic plasticity. Neuroscientist 14, 276-286.

  • Jung SC, Kim J & Hoffman DA. (2008). Rapid, bidirectional remodeling of synaptic NMDA receptor subunit composition by A-type K+ channel activity in hippocampal CA1 pyramidal neurons. Neuron 60, 657-671.

  • Kim J, Nadal M, Clemens AM, Baron M, Jung SC, Misumi Y, Rudy B & Hoffman DA. (2008). The Kv4 accessory protein DPPX is a critical regulator of membrane excitability in hippocampal CA1 pyramidal neurons. J Neurophysiol. 100, 1835-1847.


  • Kim J*, Jung SC, Clemens AM, Petralia RS & Hoffman DA. (2007). Regulation of dendritic excitability by activity-dependent trafficking of the A-type K+ channel subunit Kv4.2 in hippocampal neurons. Neuron 54, 933-947.


  • Kim J, Wei DS & Hoffman DA. (2005). Kv4 potassium channel subunits control action potential repolarization and frequency-dependent broadening in rat hippocampal CA1 pyramidal neurones. J Physiol 569, 41-57.

  • Shimshek DR, Bus T, Kim J, Mihaljevic A, Mack V, Seeburg PH, Sprengel R & Schaefer AT. (2005). Enhanced odor discrimination and impaired olfactory memory by spatially controlled switch of AMPA receptors. PLoS Biol 3, e354.


  • Kim J, Dittgen T, Nimmerjahn A, Waters J, Pawlak V, Helmchen F, Schlesinger S, Seeburg PH & Osten P. (2004). Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. J Neurosci Methods 133, 81-90.

  • Krestel HE, Shimshek DR, Jensen V, Nevian T, Kim J, Geng Y, Bast T, Depaulis A, Schonig K, Schwenk F, Bujard H, Hvalby O, Sprengel R & Seeburg PH. (2004). A genetic switch for epilepsy in adult mice. J Neurosci 24, 10568-10578.

  • Schulz TW, Nakagawa T, Licznerski P, Pawlak V, Kolleker A, Rozov A, Kim J, Dittgen T, Kohr G, Sheng M, Seeburg PH & Osten P. (2004). Actin/alpha-actinin-dependent transport of AMPA receptors in dendritic spines: role of the PDZ-LIM protein RIL. J Neurosci 24, 8584-8594.


  • Shimshek DR, Kim J, Hubner MR, Spergel DJ, Buchholz F, Casanova E, Stewart AF, Seeburg PH & Sprengel R. (2002). Codon-improved Cre recombinase (iCre) expression in the mouse. Genesis 32, 19-26.

  • Anastassiadis K, Kim J, Daigle N, Sprengel R, Scholer HR & Stewart AF. (2002). A predictable ligand regulated expression strategy for stably integrated transgenes in mammalian cells in culture. Gene 298, 159-172.

  • Kim J, Shin S-H, Cho S-H & Lee W-S. (2000). DNA endonuclease- and active oxygen- associated degradation of chloroplast DNA in response to paraquat-induced oxidative stress. J Plant Biology 43, 226-231.

  • Hur GH, Kim YB, Choi DS, Kim J & Shin S. (1998). Apoptosis as a mechanism of 2- chloroethylethyl sulfide-induced cytotoxicity. Chem Biol Interact 110, 57-70.

  • Kim J, Park EJ, Lee TK & Lee WS. (1996). Genomic sequences of the Soybean 24 kDa Oleosin genes and initial analysis of their promoter sequences. Mol Cells 6, 393-399.