Publications
* joint first authors with equal contribution
# corresponding authors with equal contribution
An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome.
[Nature Communications] [Project website]
Shixuan Liu, Camile Ezran, ..., The Tabula Microcebus Consortium^, ..., Mark A. Krasnow#, James E. Ferrell, Jr.#.
^Jia Zhao is a member of the Tabula Microcebus Consortium.
Nature Communications. 15(1), 2188, 2024.
Differential developmental blueprints of organ-intrinsic nervous systems
[bioRxiv]
I-Uen Hsu, Yingxin Lin, Yunshan Guo, Qian J. Xu, Yuancheng Shao, Ruiqi L. Wang, Dominic Yin, Jia Zhao, Lawrence H. Young, Hongyu Zhao, Le Zhang#, Rui B. Chang#.
Preprint. 2023.
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
[Nature Machine Intelligence] [Full text] [bioRxiv] [Software] [Website]
Gefei Wang*, Jia Zhao*, Yan Yan, Yang Wang, Angela Ruohao Wu#, Can Yang#.
Nature Machine Intelligence. 5(11), 1200-1213, 2023.
Adversarial domain translation networks for fast and accurate integration of large-scale atlas-level single-cell datasets.
[Nature Computational Science] [Full text] [bioRxiv] [Software] [Blog]
Jia Zhao*, Gefei Wang*, Jingsi Ming, Zhixiang Lin, Yang Wang, The Tabula Microcebus Consortium, Angela Ruohao Wu#, Can Yang#.
Nature Computational Science. 2(5), 317–330, 2022.
FIRM: Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets.
[Briefings in Bioinformatics] [bioRxiv] [Software]
Jingsi Ming*, Zhixiang Lin*, Jia Zhao, Xiang Wan, Can Yang#, Angela Ruohao Wu#.
Briefings in Bioinformatics. bbac167, 2022.
Mendelian Randomization for causal inference accounting for pleiotropy and sample structure using genome-wide summary statistics.
Xianghong Hu*, Jia Zhao*, Zhixiang Lin, Yang Wang, Heng Peng, Hongyu Zhao#, Xiang Wan#, Can Yang#.
Proceedings of the National Academy of Sciences. 119(28), e2106858119, 2022.
scPI: A scalable framework for probabilistic inference in single-cell RNA-sequencing data analysis.
(The 2024 Statistics in Biosciences Best Paper Award)
[Statistics in Biosciences] [PDF] [Software]
Jingsi Ming, Jia Zhao, Can Yang.
Statistics in Biosciences. 2022.
Mouse lemur transcriptomic atlas elucidates primate genes, physiology, disease, and evolution.
The Tabula Microcebus Consortium^, ..., Stephen R. Quake#, Mark A. Krasnow#.
^Jia Zhao is a member of the Tabula Microcebus Consortium.
Preprint. 2022.
Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism. Preprint. 2021. ^Jia Zhao is a member of the Tabula Microcebus Consortium.
The Tabula Microcebus Consortium^, Camille Ezran*, Shixuan Liu*, Stephen Chang*, Jingsi Ming, Olga Botvinnik, Lolita Penland, Alexander Tarashansky, Antoine de Morree, Kyle J. Travaglini, Jia Zhao, Gefei Wang, Kazuteru Hasegawa, Hosu Sin, Rene Sit, Jennifer Okamoto, Rahul Sinha, Yue Zhang, Caitlin J. Karanewsky, Jozeph L. Pendleton, Maurizio Morri, Martine Perret, Fabienne Aujard, Lubert Stryer, Steven Artandi, Margaret Fuller, Irving L. Weissman, Thomas A. Rando, James E. Ferrell, Jr., Bo Wang, Iwijn De Vlaminck, Can Yang, Kerriann M. Casey, Megan A. Albertelli, Angela Oliveira Pisco, Jim Karkanias, Norma Neff, Angela Ruohao Wu, Stephen R. Quake#, Mark A. Krasnow#.
^Jia Zhao is a member of the Tabula Microcebus Consortium.
Preprint. 2021.
Bayesian weighted Mendelian randomization for causal inference based on summary statistics.
Jia Zhao, Jingsi Ming, Xianghong Hu, Gang Chen, Jin Liu, Can Yang.
Bioinformatics. 36(5), 1501-1508, 2020.