Publications
Machine Learning
Multiscale PHATE Exploration of SARS-CoV-2 Data Reveals Multimodal Signatures of Disease [PDF], Manik Kuchroo*, Jessie Huang*, Partrick Wong*, et al. Nature Biotechnology, 1-11, 2022. (* First author, equal contribution)
Data-driven approaches for genetic characterization of SARS-CoV-2 lineages, Mostefai, Fatima, Isabel Gamache, Jessie Huang, Arnaud N’Guessan, Justin Pelletier et al. Frontiers in Medicine, 9, 2022 .
Neural Network Predicts Need for Red Blood Cell Transfusion for Patients with Acute Gastrointestinal Bleeding Admitted to the Intensive Care Unit [PDF]. Dennis Shung, Jessie Huang, et al. Nature Scientific Reports. 2021.
Learning shared neural manifolds from multi-subject fMRI data, Jessie Huang*, Erica Busch*, Tom Wallenstein*, et al. (Preprint)
Topological analysis of single-cell hierarchy reveals inflammatory glial landscape of macular degeneration [PDF], Under Review. 2021.
Visualizing high-dimensional trajectories on the loss-landscape of ANNs [PDF]. Stefan Horoi, Jessie Huang, Guy Wolf and Smita Krishnaswamy. Symposium on Intelligent Data Analysis (IDA). 2022.
Trajectory Net: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics [PDF], Alex Tong, Jessie Huang, Guy Wolf, David Van Dijk, and Smita Krishnaswamy. International Conference on Machine Learning (ICML). 2020.
Learning Safe Policies with Expert Guidance [PDF], Jessie Huang, Fa Wu, Doina Precup, and Yang Cai. Advances in Neural Information Processing Systems (NeurIPS). 2018.
Other
Self-healing of Pores in PLGAs [HTML, PDF] J Huang, JM Mazzara, SP Schwendeman, MD Thouless, Journal of Controlled Release 206, 20-29, 2015
The Collapse and Expansion of Liquid-Filled Elastic Channels and Cracks [HTML] F Meng, J Huang, MD Thouless, Journal of Applied Mechanics 82.10, 2015
The Control of Crack Arrays in Thin Films [HTML, PDF] J Huang, BC Kim, S Takayama, MD Thouless, Journal of Materials Science 49.1, 255-268, 2014
Fracture-Based Fabrication of Normally Closed, Adjustable, and Fully Reversible Microscale Fluidic Channels [HTML] BC Kim, C Moraes, J Huang, T Matsuoka, MD Thouless, S Takayama, Small 10 (19), 4020-2029, 2014
Fracture-Based Micro and Nanofabrication for Biological Applications [HTML] BC Kim, C Moraes, J Huang, MD Thouless, S Takayama, Biomaterials Science 2(3), 288-296, 2014
Guided Fracture of Films on Soft Substrates to Create Micro/Nano-Feature Arrays with Controlled Periodicity [HTML] BC Kim, T Matsuoka, C Moraes, J Huang, MD Thouless, S Takayama, Scientific Reports, 3, 3027, 2013
Nanoscale Squeezing in Elastomeric Nanochannels for Single Chromatin Linearization [HTML] T Matsuoka, BC Kim, J Huang, NJ Douville, MD Thouless, S Takayama, Nano Letters 12 (12), 6480-6484, 2012