International Journals
Chun-Chi Chen, Song-Xian Lin, and Hyundoo Jeong, "Low complexity Timing Correction Methods for Heart Rate Estimation Using Remote Photoplethysmography," Sensors 25.2 (2025): 588.
Chun-Chi Chen, Yi-Ming Chan, and Hyundoo Jeong, "REDalign: Accurate RNA structural alignment using Residual Encoder-Decoder Network," BMC Bioinformatics 25.1 (2024): 346.
Shin, Sungtae, Soonyoung Choi, Chaeyoung Kim, Azin Sadat Mousavi, Jin-Oh Hahn, Sehoon Jeong, and Hyundoo Jeong, "BCG Signal Quality Assessment Based on Time-Series Imaging Methods," Sensors 23.23 (2023): 9382.
Chun-Chi Chen, Yi-Ming Chan, and Hyundoo Jeong, "LSTM4piRNA: Efficient piRNA Detection in Large-Scale Genome Databases using a Deep Learning-Based LSTM Network," International Journal of Molecular Sciences 24.21 (2023): 15681.
Jun Seo Ha and Hyundoo Jeong, "GRACE: Graph autoencoder based single-cell clustering through ensemble similarity learning," PLoS ONE 18(4): e0284527., Apr. 2023.
Sumin Cho, Hyemin Choi, Hyundoo Jeong, Su Yeon Kwon, Eun Ji Roh, Kwang-Hun Jeong, Inho Baek, Byoung Ju Kim, Soo-Hong Lee, Inbo Han, and Jae Min Cha, "Preclinical study of human bone marrow-derived mesenchymal stem cells using a three-dimensional manufacturing setting for enhancing spinal fusion," STEM CELLS Translational Medicine, 2022.
Hyundoo Jeong, Sungtae Shin, and Hong Gi Yeom, "Accurate single-cell clustering through ensemble similarity learning," Genes 12 (11), 1670, 2021
Hong Gi Yeom and Hyundoo Jeong, "F-Value time-frequency analysis: between-within variance analysis," Frontiers in Neuroscience, 15, 2021.
Yijie Wang†, Hyundoo Jeong†, Byung-Jun Yoon, and Xiaoning Qian, “ClusterM: A scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks," BMC Genomics, 21, 615 (2020). †Equally contributed
Hyundoo Jeong and Zhandong Liu, “PRIME: a probabilistic imputation method to reduce dropout effects in single cell RNA sequencing," Bioinformatics, vol. 36, no. 13, pp. 4021–4029, July 2020.
Hyundoo Jeong† and Navadon Khulnergit†, “Effective single-cell clustering through ensemble feature selection and similarity measurements," Computational Biology and Chemistry, vol 87, 107283 . †Equally contributed
Hyun-Myung Woo†, Hyundoo Jeong† and Byung-Jun Yoon, "NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families," PLoS ONE 15(1): e0227598., Jan. 2020. †Equally contributed
Chun-Chi Chen, Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon, “TOPAS: network-based structural alignment of RNA sequences," Bioinformatics, vol. 35, no. 17, pp. 2941–2948, Sept. 2019. [Software]
Noushin Ghaffari†, Osama A. Arshad†, Hyundoo Jeong†, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson, “Examining de novo transcriptome assemblies via a quality assessment pipeline,” IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, no. 2, pp. 494-505, 2018. †Equally contributed [Supplementary material]
Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon, “CUFID-query: random walk based network querying through network flow estimation,” BMC Bioinformatics, 18(Suppl 14):12, 2017.
Hyundoo Jeong and Byung-Jun Yoon, “SEQUOIA: Significance enhanced network querying through context-sensitive random walk and minimization of network conductance,” BMC Systems Biology, 11(Suppl 3):20, 2017. [Software]
Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon, “Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model,” BMC Bioinformatics, 17(Suppl 13):395, 2016 . [Software]
Hyundoo Jeong and Byung-Jun Yoon, “Accurate multiple network alignment through context-sensitive random walk,” BMC Systems Biology, 9(Suppl 1):S7, 2015 [Supplementary material]
Hyundoo Jeong and Byung-Jun Yoon, “Effective estimation of node-to-node correspondence between different graphs,” IEEE Signal Processing Letters, vol. 25, no. 6, pp. 661-665, June 2015.