Mycobacterium Tuberculosis Glycolipids Disorganize Host Cell Membranes and Rewire Membrane-Associated Functions During Infection
Microbial lipids play a critical role in the pathogenesis of infectious diseases. 1 Mycobacterium tuberculosis (Mtb)—causative agent of Tuberculosis—synthesizes chemically distinct glycolipids that are exposed on its outer membrane and interact with the membranes of host macrophages. 2-3 However, the effects of the structurally diverse Mtb glycolipids on the host cell membrane properties to fine-tune the host cellular response is unknown. In this work, we combined membrane biophysics, cell biology and molecular simulations to assess the effects of different Mtb lipids on cell membrane mechanics, lipid diffusion, and cytoskeleton of THP-1 macrophages. 4-6 We found that Mtb lipids are transferred to macrophage membranes in a lab infection model, followed by modulation of macrophage membrane biophysical properties, and actin cytoskeleton. Physicochemical assays with Mtb sulpholipid-1 analogs revealed insights into their structure-function relationships highlighting specific roles of lipid acyl chains and head group along with effects on membrane-associated autophagy and cytokine signaling. Collectively, our work emphasizes that Mtb can fine-tune its interactions with the host cells by modulating its surface lipid profile during infection. These observations provide a novel lipid-centric paradigm of Mtb pathogenesis that is amenable to pharmacological inhibition and could promote the development of robust biomarkers of Mtb infection and pathogenesis.
Synthesis and biophysical evaluation of G-quadruplex stabilizing and i-motif destabilizing ligands
G-quadruplexes (G4) are one of the most studied secondary structure of nucleic acid formed by G-rich sequence of DNA/RNA. 1 Complementary C-rich sequences can form i-motif structures (iM) through hemi-protonated C-C+ base pairing.2 These highly dynamic secondary structures can regulate a variety of biological processes such as replication, transcription and translation3 (Figure 1). Herein, we report the synthesis and biophysical evaluation of bisindolylmaleimde derivatives as novel G4/iM interacting molecules. The FRET melting and CD melting experiments have shown that the lead molecule selectively stabilized G4s (Tm = 8 to12 °C) and destabilized iM structures (Tm = - 6 to -14 °C). CD titration revealed that upon addition of ligand, iM structure unfolds. From cell based studies, ligand exhibited cytotoxicity against HeLa cell line with IC50 =4.90.4 M. The rt-PCR studies revealed down regulation of c-MYC gene by ligand. Hence, our results show the emergence of a new class of molecular scaffolds for both therapeutic and diagnostic applications centred around G4/iM structures.
Self-Assembled Hybrid Micro Droplets
Nematic liquid crystal (NLCs) microdroplets in water are a new type of functional material and it has been significantly explored in the sensing applications due to its tunable optical properties, high surface area and portability.1 However, there are only a few examples are shown in literature for the biofunctionalization of LC droplets with proteins which is specific. In this talk, I will present our work on preparation of bioactive hybrid material from LC droplets and biomolecules. We have developed a novel and generic method to prepare protein sequestered 4-cyano-4-pentylbiphenyl (5CB) LC droplets based on uptake of surface-engineered protein-polymer surfactant (PS) bioconjugates.2 The modification of protein with PS was carried out at a near-native structure. Combined Polarizing Optical Microscopy (POM) and Fluorescence imaging studies of mixing 5CB LC droplets with Myoglobin-PS (Mb-PS) bioconjugates show uptake of protein to the interior of droplets without structural or functional degrades. On the other hand native myoglobin (nMb) protein with 5CB droplets results in aggregation and destabilization. Isothermal Titration Calorimetry (ITC) study confirms a strong and favorable interaction between Mb-PS and 5CB LC droplets, unlike nMb. Microstructure analysis of LC droplets sequestered with Mb-PS bioconjugates using small-angle X-ray scattering and FTIR imaging experiments reveals the co-existence of protein phase within the organic LC phase. An interesting outcome from the Molecular dynamic simulation study confirms strong interaction between PS and LC which is driven by the hydrophobic part of the polymer chain and hence amphiphilic nature of PS stabilizes bioconjugates in an LC phase. Our method opens a new pathway to prepare the multifunctional material of LC and biomolecules that will find potential biosensing applications.
A Multilayer Approach to the Equation of Motion Coupled- Cluster Method for the Electron Affinity
Electron attachment plays an essential role in many of the biological processes, which include photosynthesis, respiration, and radiation damage to biomolecules. Theoretical simulations can play a significant role in understanding the physics and the chemistry of the electron attachment induced biological processes. However, most of the existing implementations of the EA-EOM-CCSD method are restricted to isolated gas-phase molecules only. But in the realistic picture, the surrounding environment can have a significant impact on the electron attachment process as the incoming electron is often delocalized. Therefore, it is a challenging task to develop theoretical models that can describe environmental effects on the electron attachment process. We have presented a multilayer implementation of the equation of motion coupled-cluster method for the electron affinity, based on local and pair natural orbitals. The method gives consistent accuracy for both localized and delocalized anionic states and results in many-fold speed-up as compared to the canonical and DLPNO-based implementation of the EA-EOM-CCSD method. We have also developed an explicit fragment-based approach which can lead to even higher speed-up with little loss in accuracy. The multilayer method can be used to treat the environmental effect of both bonded and nonbonded nature on the electron attachment process in large molecules
A Unique Fe(II)-S • Complex: Synthesis, Structure, Spectroscopy and Reactivity
In literature Non-heme Fe(IV)=O model systems, their spectroscopic properties and reactivity have been explored in detail. However, literature about Fe(III)-oxo compounds is scant, although they are important intermediates in iron-catalyzed oxidation reactions. The iron-sulfur systems have not found much attention although sulfido transition metal complexes are of biological importance for enzymatic and industrial hydride-sulfurization. Here we report a unique Fe(II)-S • complex of ligand L (Figure 1), its structural and electronic properties and reactivity. In solution, the triflate salt of the Iron(II) complex of ligand L is transformed quantitatively to the corresponding Fe(II)-S • complex and this Fe(II)-S • species thoroughly characterized by various spectroscopic techniques i.e., crystal structure, Mӧssbauer, EPR and further supported by DFT calculations. Electronic structure of complex 1a upon comparison to its analogue Fe-aqua complex i.e., complex 2 revealed that in case of complex 2, water molecule is attached to Fe-centre instead of sulfido moiety. The reactivity of the Fe II -S • complex was tested with tricyclohexylphosphine and yielded selectively the novel diphosphine product Cy 3 PSPCy 3 , characterized by 31 P-NMR and UPLC-MS.
Glycation and Drug Transport by Human Serum Albumin: Mechanistic Insights and Implications in Diabetic Conditions
Drug transport ability of human serum albumin might get affected as a result of its glycation under hyperglycemic conditions. It requires not only an understanding of effect of glycation of the protein on association with the drug, but also calls for an assessment of structure-property-energetics relationships. A combination of ultrasensitive calorimetric, spectroscopic and chromatographic approach has been employed to correlate the thermodynamic signatures with recognition, conformation and mechanistic details of the processes involved. The advanced glycation end products (AGEs) formed post glycation are monitored to be targeted by the guanidine group present in anti-diabetic drugs. Ketoamines and AGEs, identified in the third and fourth week of glycation are significant in the recognition of anti-diabetic drugs. The results with metformin and aminoguanidine suggest that the extent of binding depends on the number of guanidine group(s) in the drug molecule. Open chain molecules having guanidine group(s) exhibit stronger affinity towards AGEs than closed ring entities like naphthalene or pyridine moiety. A rigorous structure-property-energetics correlation done by using anti-inflammatory and anti-diabetic drugs, and identification of functional groups responsible for recognition by HSA have direct implications in rational drug design. The observation that the drug transport ability of HSA is not adversely affected, rather strengthened upon glycation, has implications in diabetic conditions. Such correlations of functionality on drug molecules with thermodynamic signatures are essential in deriving guidelines for rational drug design targeted at drug transport properties of protein in addressing diabetes.
Cascade reaction of curcuminoids with Morita-Baylis-Hillman bromides of nitroalkenes for the synthesis of 3,4-dihydro-2H-pyrans
Curcumin is the active phytochemical found in turmeric Curcuma longa.1 It is used as a food additive and curry spice in India and other eastern countries, mainly for its flavor and color profile. In ancient times, it was also used in ayurvedic medicines for the treatment of a variety of health conditions such as diabetic wounds, jaundice, skin burns, skin allergies, rheumatoid arthritis, respiratory illness, etc. Recently, many reports appeared in the literature that described the biological activities of curcumin, such as anti-oxidant, anticancer, anti-inflammatory, antimetastatic, anti-HIV protease and anti-Alzheimer’s.2 It is also found that different analogs of curcumin possess a variety of biological activities, and many of these synthetic compounds were more active than the naturally occurring curcumin.3 Hence, development of methodologies for the synthesis of differently substituted molecules from curcuminoids is gaining a great deal of interest.
Diverse reactivity exhibited by conjugated nitroalkenes and their derivatives was well explored in our laboratory for the synthesis of various carbocycles and heterocycles such as imidazoles, imidazopyridines, pyridopyrimidines, pyrroles, furans, pyrans, etc.4 Herein, we describe the stereo- and regioselective synthesis of nitro substituted 3,4-dihydro-2H-pyrans via a cascade reaction of Morita-Baylis-Hillman bromides of nitroalkenes with various curcuminoids under mild reaction conditions