SOFTWARE

THE REAL McCOIL: A Markov chain Monte Carlo method that estimates complexity of infection and population allele frequencies using SNP data obtained from Sequenom or similar types of SNP assays

You can download the software here: https://github.com/Greenhouse-Lab/THEREALMcCOIL

These maps show the inferred complexity of infection using THE REAL McCOIL.

Figure 2 from Chang H-H, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, et al. (2017) THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS Comput Biol 13(1): e1005348. https://doi.org/10.1371/journal.pcbi.1005348.