You'll find here the R code.

1) To use this package, download the file for scPathwayRF by right clicking on this link here.

2) Choose Save Link As...

3) Open R / Rstudio and type the R code in the console:

install.packages("LOCALPATH_OF_SCPATHWAYRF/scPathwayRF_0.1.0.tar.gz", repos = NULL, type = "source")

## LOCALPATH_OF_SCPATHWAYRF is the path where you stored the file for scPathwayRF

## ERROR of installation will appear if prerequisite packages are not installed. Please install the following packages:

## install.packages(c("randomForest","caret","igraph","ggplot2","reshape","e1071","kernlab","robustbase","Fpc","rtsne"))

## Once installed scPathwayRF successfully, load scPathwayRF to the library and check the help file by the R code:

4) library(scPathwayRF)

## scPathwayRF has five major functions to complete the whole pipeline of analysis. Check the help file and code of examples in details by the R code:

5) help(scPathwayRF)

You may also read a step by step guide here