20. Kim, H. S., Grimes, S. M., Chen, T., Sathe, A., Lau, B., Hwang, G.-H., Bae, S., Ji, H. P. (2023) Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells. Nature Biotechnology.
19. Grimes, S.M., Kim, H. S., Roy, S., Sathe, A., Ayala, C.I., Bai, X., Almeda-Notestine, A.F., Haebe, S., Shree, T., Levy, R., Lau, B., Ji, H. P. (2023) Single-cell multi-gene identification of somatic mutations and gene rearrangements in cancer. NAR Cancer.
18. Gao, M., Lee, S. H., Das, R. K., Kwon, H. Y., Kim, H. S., Chang, Y. T. (2022). A SLC35C2 Transporter-Targeting Fluorescent Probe for the Selective Detection of B Lymphocytes Identified by SLC-CRISPRi and Unbiased Fluorescence Library Screening. Angew Chem Int Ed Engl.
17. Miasiro Ciaramicoli, L., Kim, H. S., Husen Alamudi, S., Chang, Y. T. (2022). ABCB1 Can Actively Pump-out the Background-Free Tame Fluorescent Probe CO-1 From Live Cells. Chem Asian J.
16. van Hees, M., Slott, S., Hansen, A. H., Kim, H. S., Ji, H. P., Astakhova, K. (2022). New approaches to moderate CRISPR-Cas9 activity: Addressing issues of cellular uptake and endosomal escape. Mol Ther.
15. Kim, H. S., Grimes, S. M., Hooker, A. C., Lau, B., Ji, H. P. (2021). Single cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing. Genome Biology.
14. Wu, C.-Y., Lau, B., Kim, H. S., Sathe, A., Grimes, S. M., Ji, H. P., Zhang, N. (2021). Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer. Nature Biotechnology.
13. Shin, H. J., Ku, K. B., Kim, S., Kim, H. S., Kim, Y.-S., Kim, B.-T., Kim, S.-J., and Kim, C. (2021). A Crucial Role of ACBD3 Required for Coxsackievirus Infection in Animal Model Developed by AAV-Mediated CRISPR Genome Editing Technique. Viruses.
12. Shin, H. R., See, J.-E., Kweon, J., Kim, H. S., Sung, G.-J., Park, S., Jang, A.-H., Jang, G., Choi, K.-C., Kim, I., Kim, J.-S., Kim, Y. (2021). Small-molecule inhibitors of histone deacetylase improve CRISPR-based adenine base editing. Nucleic Acids Research.
11. Miyamoto, N., Go, Y. H., Ciaramicoli, L. M., Kwon, H. Y., Kim, H. S., Bi, X., Yu, Y. H., Kim, B., Ha, H. H., Kang, N. Y., Yun, S. W., Kim, J. -S., Cha, H. J., Chang, Y. T. (2021). Target identification of mouse stem cell probe CDy1 as ALDH2 and Abcb1b through live-cell affinity-matrix and ABC CRISPRa library. RSC Chem Biol.
10. Kim, H. S., Hwang, G.-H., Lee, H. K., Bae, T., Park, S.-H., Kim, Y. J., Lee, S., Park, J.-H., Bae, S., and Hur, J. K. (2021). CReVIS-Seq: A highly accurate and multiplexable method for genome-wide mapping of lentiviral integration sites. Molecular Therapy - Methods & Clinical Development.
9. Hwang, G.-H., Yu, J., Yang, S., Son, W. J., Lim, K., Kim, H. S., Kim, J.-S., Bae, S. (2020). CRISPR-sub: Analysis of DNA substitution mutations caused by CRISPR-Cas9 in human cells. Comput Struct Biotechnol J
8. Kim, H. S., Jeong, Y. K., Hur, J. K., Kim, J.-S., and Bae, S. (2019). Adenine base editors catalyze cytosine conversions in human cells. Nature Biotechnology.
7. Park, S.-J., Kim, B., Choi, S., Balasubramaniam, S., Lee, S.-C., Lee, J. Y., Kim, H. S., Kim, J.-Y., Kim, J.-J., Lee, Y.-A., Kang, N.-Y., Kim, J.-S., Chang, Y.-T. (2019). Imaging inflammation using an activated macrophage probe with Slc18b1 as the activation-selective gating target. Nat Communications.
6. Kim, H. S., Lee, K., Kim, S. J., Cho, S., Shin, H. J., Kim, C., Kim, J.-S. (2018) Arrayed CRISPR screen with image-based assay reliably uncovers host genes required for coxsackievirus infection. Genome Research.
5. Ryu, S. M., Koo, T., Kim, K., Lim, K., Baek, G., Kim, S.T., Kim, H. S., Kim, D. E., Lee, H., Chung, E., Kim, J.-S. (2018) Adenine base editing in mouse embryos and an adult mouse model of Duchenne muscular dystrophy. Nature Biotechnology.
4. Kim, H. S., Lee, K., Bae, S., Park, J., Lee, C. K., Kim, M., Kim, E., Kim, M., Kim, S., Kim, C., Kim, J.-S. (2017) CRISPR/Cas9-mediated gene knockout screens and target identification via whole-genome sequencing uncover host genes required for picornavirus infection. Journal of Biological Chemistry.
3. Lee, S., Yu, J., Hwang, G. H., Kim, S., Kim, H. S., Ye, S., Kim, K., Park, J., Park, D. Y., Cho, Y.-K., Kim, J.-S., Bae, S. (2017) CUT-PCR: CRISPR-mediated, ultrasensitive detection of target DNA using PCR. Oncogene.
2. Bae, S., Kweon, J., Kim H. S., Kim, J.-S. (2014) Microhomology-based choice of Cas9 nuclease target sites. Nature Methods.
1. Cho, S. W., Kim, S., Kim, Y., Kweon, J., Kim H. S., Bae, S., Kim, J.-S. (2013) Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases. Genome Research.