Publications
Selected publications
Radivojević, T. et al. "A machine learning Automated Recommendation Tool for synthetic biology"
Nature Communications 11, 4879 (2020)
Nature Communications 11, 4880 (2020).
Nature pj Systems Biology & Applications 4.1: 19 (2018).
Warnecke, F., et al. “Metagenomic and functional analysis of hindgut microbiota of a wood feeding higher termite”
García Martín, H., et al. “Metagenomic analysis of phosphorus removing sludge communities”
García Martín, H. and Goldenfeld, N. “On the origin and robustness of power-law species-area relationships in ecology”
Nature, 450(7169):560-5 (2007).
Nature Biotechnology, 24: 1263-9 (2006).
PNAS, 103(27):10310-5 (2006).
Latest publications
You can find Hector's latest publications in the Quantitative Metabolic Modeling group's publications page or his google scholar profile.
Publications before quantitative metabolic modeling group
Kunin, V., He, S., Warnecke, F., Peterson, S.B., García Martín, H., Haynes, M., Ivanova, N., Blackall, L.L., Breitbart, M., Rohwer, F., McMahon, K.D., Hugenholtz, P.¨A bacterial metapopulation adapts locally to phage predation despite global dispersal¨
Genome Research, 18:293-7 (2008).
Warnecke, F., Luginbühl, P., Ivanova, N., Ghassemian, M., Richardson, T.H., Stege, J.T., Cayouette, M., McHardy, A.C., Djordjevic, G., Aboushadi, N., Sorek, R., Tringe, S.G., Podar, M., García Martín, H., Kunin, V., Dalevi, D., Madejska, J., Kirton, E., Platt, D., Szeto, E., Salamov, A., Barry, K., Mikhailova, N., Kyrpides, N.C., Matson, E.G., Ottesen, E.A., Zhang, X., Hernández, M., Murillo, C., Acosta, L.G., Rigoutsos, I., Tamayo, G., Green, B.D., Chang, C., Rubin, E.M., Mathur, E.J., Robertson, D.E., Hugenholtz, P., Leadbetter, J.R. “Metagenomic and functional analysis of hindgut microbiota of a wood feeding higher termite”
Nature, 450(7169):560-5 (2007).
McMahon, K.D., García Martín, H., Hugenholtz, P. “Integrating ecology into biotechnology”
Current Opinion in Biotechnology 18(3):287-92 (2007).
Marcy, Y., Ouverney, C., Bik, E.M., Lösekann, T., Ivanova, N., García Martín, H., Szeto, E., Platt, D., Hugenholtz, P., Relman, D.A., Quake, S.R. “Dissecting biological ‘dark matter’ with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.”
PNAS 104(29): 11889-94 (2007).
Tang, Y.J., Chakraborty, R., Garcia Martin, H., Chu, J., Hazen, T.C., Keasling, J.D. “Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid” Applied Environmental Microbiology, 73(12):3859-64 (2007).
McHardy, A. C., García Martín, H., Tsirigos, A., Hugenholtz, P. and Rigoutsos, I. “Accurate Phylogenetic Classification of variable-length DNA fragments” Nature Methods, 4(1):63-72 (2006).
García Martín, H., Ivanova, N., Kunin, V., Warnecke, F., Barry, K., McHardy, A.C., Yeates, C., He, S., Salamov, A., Szeto, E., Dalin, E., Putnam, N., Shapiro, H.J., Pangilinan, J.L., Rigoutsos, I., Kyrpides, N.C., Blackall, L.L., McMahon, K.D. and Hugenholtz, P. “Metagenomic analysis of phosphorus removing sludge communities”
Nature Biotechnology, 24: 1263-9 (2006).
Markowitz, V.M., Ivanova, N., Palaniappan, K., Szeto, E., Korzeniewski, F., Lykidis, A., Anderston, I., Mavromattis, K., Kunin, V., Garcia Martin, H., Dubchack, I., Hugenholtz, P. and Kyrpides, N.C. “An experimental metagenome data management and analysis system”
Bioinformatics 22(14): e359-67 (2006).
García Martín, H. and Goldenfeld, N “On the origin and robustness of power-law species-area relationships in ecology”
PNAS 103(27):10310-5 (2006).
García Martín, H. and Goldenfeld, N. “Estimation of microbial cover distributions at Mammoth Hot Springs using a multiple clone library resampling method”
Environmental Microbiology 8(7):1145-54 (2006).
García Martín, H. and Goldenfeld, N. “Linearity and scaling of a statistical model for the species abundance distribution” \
Physical Review E 65 032901 (2002).