GraphMed is an on-demand data analytics service registered in Australia (ABN 79542891621)
Assoc/Prof Rebecca Lim (Monash), Prof Sudha Rao (QIMR), Prof Chamindie Punyadeera (Griffith), Prof Eva Segelov and Dr Amy Body (Monash) - the SerOzNet project; Dr/Prof Raghav Sundar (NUS Singapore); Dr Simon Conn (Flinders)
"If you are looking for friendly, reliable bioinformatics support, Sri is your guy. You don't have to be a bioinformatics expert to use his services, but you may very well walk away feeling like one!" -- Dr Rebecca Lim, Hudson Institute (Monash) and PTX Therapeutics, Melbourne
"[PhD student] Mihiri really appreciates all of your help. She feels so much more confident now - and I'm so pleased to be recommending your services to my friends too. You're doing a spectacular job!!!"
-- Assoc/Prof Dr Rebecca Lim, Hudson Institute (Monash) Melbourne
"Much appreciate your time and efforts. You did a great job."
-- Prof Chamindie Punyadeera, Griffith University Brisbane
"Sri explained different ways of visualising data using various R plots! The webinar was very useful and informative. Thank you Sri for this useful R codes for biologists!!"-- Srividhya Swaminathan, PhD student, QIMR & UQ
"This was a value driven session. Very helpful for people who have a basic knowledge of R. Very useful for plotting complex human data sets. Thank you Sri." -- Priyanka DuttaGupta, Res Fellow, UChicago
For more testimonials, visit my Topmate page
*Labels and captions are not incomplete, they have been edited out or made small due to proprietary data
(C) Sriganesh Srihari 2023 - COPYING OR DOWNLOADING OF MATERIAL FROM THIS WEBSITE WITHOUT PRIOR PERMISSION IS NOT ALLOWED
EGFR signalling network (published in Nature Communications 2020) (Click to enlarge)
AMPK signalling pathway with measurements for proteins in the pathway (published in British Journal of Cancer, 2019)
Protein complexes identified from the human protein-protein interaction network (ACM Books, 2017)
J Clinical Investigation (2020) https://www.jci.org/articles/view/138649/figure/8
Scatter plot (proprietary data)
An "oncoprint" (proprietary data)
Weighted gene co-expression network (WGCN) analysis and visualization of modules across timepoints (British J Cancer 2019)
Pie charts (proprietary data)
Heatmap of a panel of genes (J Clinical Investigation 2020) (Click to enlarge)
Heatmap using viridis colour scale (proprietary data; under consideration)
Deriving signatures (under consideration)
Spearman heatmap showing correlation between samples (under consideration)
Expression density map by read counts (proprietary data; under consideration)
Genes and their functional enrichment across groups
Protein complex-complex interaction network (Nature Communications, 2020) (Click to enlarge)
Enriched pathways (under consideration)
Principal curve in 3D space (Molecular Omics, 2018)
Survival curves (under consideration)
Heatmap of dysregulated pathways (Molecular Omics 2018)
Mapping pathways (J Clinical Investigation 2020)
3D PCA plot (under consideration) (Click to enlarge)
Visualizing changes over time (time-series plot) (Under consideration) (Click to enlarge)
Smooth proportions plot (good for visualizing microbiome compositions) (proprietary data; under consideration)
Proprietary data
Proprietary data
Animated GIF of time-series data (Under consideration)
