Journal Club

A non-canonical tricarboxylic acid cycle underlies cellular identity

Date : 2022.03.25 Presenter : Ingyu, Song Journal : Nature, 2022

Link : doi.org/10.1038/s41586-022-04475-w

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Date : 2022.04.29 Presenter : Songwon, Lim Journal : Cell, 2015

Link : www.cell.com/fulltext/S0092-8674(15)00549-8

Minimizing treatment-induced emergence of antibiotic resistance in bacterial infections

Date : 2022.04.29 Presenter : Jaewoo Baek Journal : Science, 2022

Link : www.science.org/doi/10.1126/science.abg9868

The gut microbial metabolite formate exacerbates colorectal cancer progression

Date : 2022.06.01 Presenter : Nayeon Park Journal : Nature Metabolism, 2022

Link : www.nature.com/articles/s42255-022-00558-0

Noninvasive assessment of gut function using transcriptional recording sentinel cells

Date : 2022.06.01 Presenter : Junwoo Jo Journal : Science, 2022

Link : www.science.org/doi/10.1126/science.abm6038

A pan-cancer metabolic atlas of the tumor microenvironment

Date : 2022.06.29 Presenter : Songwon Lim Journal : Cell Reports, 2022

Link : www.sciencedirect.com/science/article/pii/S2211124722005678?via%3Dihub%EC%9E%85%EB%8B%88%EB%8B%A4

The gut metabolite indole-3 propionate promotes nerve regeneration and repair

Date : 2022.07.12 Presenter : Youngchang Seo Journal : Nature, 2022

Link : www.nature.com/articles/s41586-022-04884-x

Enteric viruses replicate in salivary glands and infect through saliva

Date : 2022.07.12 Presenter : Minjun Kim Journal : Nature, 2022

Link : www.nature.com/articles/s41586-022-04884-x

Gut microbiome of multiple sclerosis patients and paired hosehold healthy controls reveal associations with disease risk and course

Date : 2022.10.18 Presenter : Minjun Kim Journal : Cell, 2022

Link : https://www.cell.com/cell/fulltext/S0092-8674(22)01115-1?fbclid=IwAR3gLKp-9Zo1tJ3s7rY1ytFv0RQs4AVatMTuiU9FoxwqBB7vtlx2clXRFTg#%20

Cancer cell states recur acorss tumor types and form specific interactions with the tumor microenvironment

Date : 2022.10.18 Presenter : Nayeon Park Journal : Nature Genetics, 2022

Link : https://www.nature.com/articles/s41588-022-01141-9

Gut bacterial nutrient preferences quantified in vivo

Date : 2022.11.16 Presenter : Youngchang Seo Journal : Cell, 2022

Link : https://www.cell.com/cell/pdf/S0092-8674(22)00923-0.pdf

Design of protein-binding proteins from the target structure alone

Date : 2022.11.16 Presenter : Jihun Jung Journal : Nature, 2022

Link : https://www.nature.com/articles/s41586-022-04654-9

Enterotypical Prevotella and three novel bacterial biomarkers in preoperative stool predict the clinical outcome of colorectal cancer

Date : 2022. 12.14 Presenter : Jaewoo Baek Journal : Microbiome, 2022

Link : https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-022-01388-8#Sec18

Personalized Genome-Scale Metabolic Models Identify Targets of Redox metabolism in Radiation-Resistant Tumors

Date : 2023. 01.17 Presenter : Songwon Lim Journal : Cell systems, 2020

Link : https://www.cell.com/cell-systems/fulltext/S2405-4712(20)30502-0

A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

Date : 2023. 01.31 Presenter : Nayeon Park Journal : Nature Genetics, 2022

Link : https://www.nature.com/articles/s41588-022-01243-4

NAD precursors cycle between host tissues and the gut microbiome

Date : 2023. 03.20 Presenter : Ingyu Song Journal : Cell Metabolism, 2022

Link : https://www.cell.com/cell-metabolism/fulltext/S1550-4131(22)00495-8

ApoE isoform - and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy

Date : 2023. 03.20 Presenter : Minjun Kim Journal : Science, 2023

Link : https://www.science.org/doi/10.1126/science.add1236

Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance

Date : 2023. 04.24 Presenter : Jinwoo Choi Journal : Cell, 2022

Link : https://www.cell.com/cell/fulltext/S0092-8674(22)00919-9

Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer

Date : 2023. 04.24 Presenter : Youngchang Seo Journal : Nature, 2023

Link : https://www.nature.com/articles/s41586-023-05728-y

Cell-cell metabolite exchange creates a pro-survival metabolic environment that extends lifespan

Date : 2023. 07.06 Presenter : Songwon Lim Journal : Cell, 2023

Link : https://www.cell.com/cell/fulltext/S0092-8674(22)01520-3

Fatty acid overproduction by gut commensal microbiota exacerbates obesity

Date : 2023. 07.14 Presenter : Nayeon Park Journal : Cell Metabolism, 2023

Link : https://www.cell.com/cell-metabolism/fulltext/S1550-4131(22)00550-2

Gut microbiome composition may be an indicator of preclinical Alzheimer's disease

Date : 2023. 07.20 Presenter : Minjun Kim Journal : Science Translational Medicine, 2023

Link : https://www.science.org/doi/full/10.1126/scitranslmed.abo2984

A gut-derived metabolite alters brain activity and anxiety behaviour in mice

Date : 2023. 07.27 Presenter : Suyeon Lee Journal : Nature, 2022

Link : https://www.nature.com/articles/s41586-022-04396-8

Gut microbiome alterations in high-fat-diet-fed mice are associated with antibiotic tolerance

Date : 2023. 08.03 Presenter : Jaewoo Baek Journal : Nature microbiology, 2021

Link : https://www.nature.com/articles/s41564-021-00912-0

Parabacteroides distasonis uses dietary inulin to suppress NASH via its metabolite pentadecanoic acid

Date : 2023. 08.09 Presenter : Youngchang Seo Journal : Nature microbiology, 2023

Link : https://www.nature.com/articles/s41564-023-01418-7

A single-nucleotide polymorphism in Helicobacter pylori promotes gastric cancer development

Date : 2023. 08.17 Presenter : Junwoo Jo Journal : Cell Host & Microbe, 2023

Link : https://www.cell.com/cell-host-microbe/fulltext/S1931-3128(23)00267-6

Spatial host-microbiome sequencing reveals niches in the mouse gut

Date : 2023. 12.01 Presenter : Jaewoo Baek Journal : Nature Biotechnology, 2023

Link : https://www.nature.com/articles/s41587-023-01988-1#Sec2

Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes

Date : 2024. 01.12 Presenter : Jaewoo Baek Journal : Cell Host & Microbe, 2020

Link : https://www.cell.com/cell-host-microbe/fulltext/S1931-3128(20)30343-7

Profiling the human intestinal environment under physiological conditions

Date : 2024. 01.26 Presenter : Hyeongjoon Ahn Journal : Nature, 2023

Link : https://www.nature.com/articles/s41586-023-05989-7#Fig1

Host genetic regulation of human gut microbial structural variation

Date : 2024. 02.02 Presenter : Suyeon Lee Journal : Nature, 2024

Link : https://www.nature.com/articles/s41586-023-06893-w

Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer's Disease

Date : 2024. 02.08 Presenter : Nayeon Park Journal : Cell Reports, 2024

Link : https://www.cell.com/cell-reports-medicine/fulltext/S2666-3791(20)30182-8

Spatial metatranscriptomics resolves host-bacteria-fungi interactomes

Date : 2024. 02.23 Presenter : Songwon Lim Journal : Nature Biotechnology, 2024

Link : https://www.nature.com/articles/s41587-023-01979-2

Staphylococcal diversity in atopic dermatitis from an individual to a global scale

Date : 2024. 03.19 Presenter : Junwoo Jo Journal : Cell Host & Microbe, 2023

Link : https://www.cell.com/cell-host-microbe/fulltext/S1931-3128(23)00114-2

Bioactive glycans in a microbiome-directed food for children with malnutrition

Date : 2024. 03.19 Presenter : Youngchang Seo Journal : Nature, 2024

Link : https://www.nature.com/articles/s41586-023-06838-3

A reference map of potential determinants for the human serum metabolome

Date : 2024. 04.23 Presenter : Minseo Park Journal : Nature, 2020

Link : https://www.nature.com/articles/s41586-020-2896-2

A gut microbial signature for combination immune checkpoint blockade across cancer types

Date : 2024. 04.23 Presenter : Jaewoo Baek Journal : Nature Medicine, 2024

Link : https://www.nature.com/articles/s41591-024-02823-z#Sec2

Epigenetic inheritance of diet-induced and sperm-borne mitochondrial RNAs

Date : 2024. 07.05 Presenter : Songwon Lim Journal : Nature, 2024

Link : https://www.nature.com/articles/s41586-024-07472-3#MOESM1

Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation

Date : 2024. 07.12 Presenter : Changpyo Hong Journal : Cell Host & Microbe, 2017

Link : https://www.cell.com/cell-host-microbe/fulltext/S1931-3128(17)30247-0

A body-brain circuit that regulates body inflammatory responses

Date : 2024. 07.19 Presenter : Jaewoo Baek Journal : Nature, 2024

Link : https://www.nature.com/articles/s41586-024-07469-y#Sec1

Discovering the genes mediating the interactions between chronic respiratory diseases in the human interactome

Date : 2024. 07.26 Presenter : Nayeon Park Journal : Nature Communications, 2020

Link : https://www.nature.com/articles/s41467-020-14600-w

Undulating changes in human plasma proteome profiles across the lifespan

Date : 2024. 08.05 Presenter : Minseo Park Journal : Nature Medicine, 2019

Link : https://www.nature.com/articles/s41591-019-0673-2

Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data

Date : 2024. 08.21 Presenter : Junwoo Jo Journal : Nature biotechnology, 2023

Link : https://www.nature.com/articles/s41587-023-01696-w

Bacterial SNPs in the human gut microbiome associate with host BMI

Date : 2024. 08.22 Presenter : Suyeon Lee Journal : Nature Medicine, 2023

Link : https://www.nature.com/articles/s41591-023-02599-8

Paternal microbiome perturbation impact offspring fitness

Date : 2024. 08.30 Presenter : Youngchang Seo Journal : Nature, 2024

Link : https://www.nature.com/articles/s41586-024-07336-w

Identification of shared and disease-specific host gene-microbiome associations accross human diseases using multi-omic integration

Date : 2024. 08.30 Presenter : Hyeongjoon Ahn Journal : Nature Microbiology, 2024

Link : https://www.nature.com/articles/s41564-022-01121-z

Divergent age-associated and metabolism-associated gut microbiome signatures modulate cardiovascular disease risk

Date : 2024. 09.24 Presenter : Changpyo Hong Journal : Nature Medicine, 2024

Link : https://www.nature.com/articles/s41591-024-03038-y

Gut metagenomes of Asian oncogenarians reveal metabolic potential expansion and distinct microbial species associated with aging phenotypes

Date : 2024. 11.05 Presenter : Suyeon Lee Journal : Nature Communications, 2024

Link : https://www.nature.com/articles/s41467-024-52097-9

Progressive senescence programs induce intrinsic vulnerability to aging-related female breast cancer

Date : 2024. 11.05 Presenter : Minseo Park Journal : Nature Communications, 2024

Link : https://www.nature.com/articles/s41467-024-49106-2

Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria

Date : 2025. 3.24 Presenter : Youngchang Seo Journal : Cell, 2024

Link : https://www.cell.com/cell/fulltext/S0092-8674(24)00305-2

Conserved genetic basis for microbial colonization of the gut

Date : 2025. 5.2 Presenter : Hyeongjoon Ahn Journal : Cell, 2025

Link : https://www.cell.com/cell/fulltext/S0092-8674(25)00283-1?uuid=uuid%3Ac6989029-1d29-4f87-a185-1dd0bfaa78d9

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