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Soutick Saha, Ph.D.
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Soutick Saha, Ph.D.
  • Home
  • Bioinformatics
    • Software Package
    • Codes
    • Data Analysis
    • Technical Blogs
    • Presentations
  • Data Science
  • Computational Biology
    • Projects
    • Publications
    • Codes
  • Mentorship
  • More
    • Home
    • Bioinformatics
      • Software Package
      • Codes
      • Data Analysis
      • Technical Blogs
      • Presentations
    • Data Science
    • Computational Biology
      • Projects
      • Publications
      • Codes
    • Mentorship

Protein Visualization Software Package

The Wolfram Protein Visualization software package provides tools for visualizing and analyzing proteins, nucleic acids, and their complexes. It includes over 20 specialized functions for structural analysis, mutation impact assessment (via AlphaMissense Data Integration), and protein structure prediction. The paclet supports nearly 1 billion protein structures from major databases like RCSB PDB, AlphaFold, and ESM Metagenomic Atlas. Additional features include protein contact maps, alpha-carbon traces, Ramachandran plots, and more.

Here is the link to the paclet and its functions are detailed below.

Visualization Functions

BiomoleculePlot3D

AlphaCarbonPathPlot3D

ProteinBackboneAtomPlot

DihedralAnglePlot

AmidePlanePlot

ProteinContactMap

ProteinContactGraphPlot

RamachandranPlot

Analysis Functions

ExtractBackboneCoordinates

ResidueDistanceMatrix

ResidueDistanceGraph

MissenseVariantData

AMPathogenicity

RamachandranAngles

Functions for Studying Mutations in Human Health (AlphaMissense)

MissenseVariantPlot3D

MissenseVariantArrayPlot

MissenseVariantListPlot

PathogenicityConfidencePlot

PathogenicityConfidenceCorrelation

MissenseVariantSubstitutionMatrixPlot

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