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Soutick Saha, Ph.D.
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Soutick Saha, Ph.D.
  • Home
  • Bioinformatics
    • ProteinVisualization paclet
    • Codes
    • Data Analysis
    • Blogs
    • Talks
  • Computational Biology
    • Projects
    • Publications
    • Codes
  • Data Science
    • Codes
  • More
    • Home
    • Bioinformatics
      • ProteinVisualization paclet
      • Codes
      • Data Analysis
      • Blogs
      • Talks
    • Computational Biology
      • Projects
      • Publications
      • Codes
    • Data Science
      • Codes

Wolfram ProteinVisualization paclet

Designed for researchers, educators, and structural biology enthusiasts alike, this powerful tool offers an immersive experience for visualizing the intricate structures of biomolecules, including proteins, nucleic acids, and their complexes. Explore the elegant geometry of molecular backbones, amide planes, and more with captivating 3D graphics. Delve deeper into structural biology by computing and visualizing key features such as contact maps and dihedral angles. Analyze the effect of mutations on human health and predict the structure of proteins from custom sequences. Whether you are analyzing protein structures, studying nucleic acid interactions, or simply marveling at the beauty of nature's molecular machines, our paclet empowers you to visualize biomolecules in a new light.

Here are the functions in the ProteinVisualization paclet:

Visualizations

BiomoleculePlot3D

AlphaCarbonPathPlot3D

ProteinBackboneAtomPlot

DihedralAnglePlot

AmidePlanePlot

ProteinContactMap

ProteinContactGraphPlot

RamachandranPlot

Effects of mutations in human health (AlphaMissense)

MissenseVariantPlot3D

MissenseVariantArrayPlot

MissenseVariantListPlot

MissenseVariantSubstitutionMatrixPlot

PathogenicityConfidencePlot

PathogenicityConfidenceCorrelation

Data

ExtractBackboneCoordinates

ResidueDistanceMatrix

ResidueDistanceGraph

RamachandranAngles

MissenseVariantData

AMPathogenicity

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