1. Knives and Shadows || 6
2. March of the Moving Dolls || 4
3. Crime and Punishment || 1
4. Ante Meridiem || 3
5. Consonance || 2
6. The Intrepid || 9
7. Tribute to W.C. I || 1
8. The Forbearer || 4
9. Envy Revealed ～Adagio～ || 2
10. Laws of Alchemy ～Instrumental～ || 3
11. Heroic Bolero || 3
12. A Soldier's Honor || 7
13. Amestris Military March || 6
14. Tribute to W.C. II || 1
15. The Pendulum || 4
16. The Day the Sun Disappeared || 6
17. Dissident's Creed || 10
18. In the Fray || 1
19. Lapis Philosophorum ～Chant～ || 4
20. Violoncello's Lament || 1
21. Sorrowful Stone || 3
22. Main Theme ～The Alchemist～ || 1
23. The Awakening || 2
24. Philosophorum Omega || 2
25. Nightfall in Central City ～Fin～ || Unused
26. Epilogue ～A New Journey～ || 2
27. Main Theme ～Homage to Alchemy～ || Unused
28. Trisha's Lullaby ～A Reminiscence～ || 9
29. Resembool's Lullaby || Unused