Software and Databases

GenDivRange

An R Shiny interface for a world-wide database of population genetic diversity and species distributions across a wide range of taxa

gridCoal

Spatially explicit 2D coalescent simulator based on msprime.

Ohta's D statistics

A speed improved version of the ohtadstats R package that is also suitable for phased data.

driftsel

Multi-trait test of adaptive divergence with test for adaptation at individual populations and improved H test for environmental variables. See details here.

castaneaonly an eco-physiological model of forest trees implemented as a Capsis project

A java implementation of the ecophysiology model "Castanea" for trees.

abc is an R package for Approximate Bayesian computation

For package highlights see a poster about the package that we presented at the recent ABCiL meeting.

For a more detailed description of the package and fully worked out examples (using the data set human) see this paper and the package's vignette.

Pairwise genetic relatedness

R code for calculating pairwise relatedness from molecular marker data for all estimators that I compared in the Genetics 2006 paper.

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