I am interested in understanding the evolutionary history of modern humans and how this shaped the diversity of phenotypes observed in contemporary populations. My current research focus is to understand how human evolutionary history shaped disease-related traits. Specifically, how pathogen-driven selection shaped immune-related phenotypes and autoimmune diseases. For this, I combine human genomics and wet-lab experiments on human cells.
My research focuses on human host factors (genes and gut microbes) that impact susceptibility to tuberculosis infection, disease progression, and treatment outcome. Tuberculosis develops in a susceptible host and a highly adapted mycobacterium strain that constantly evolves to evade treatment modalities.
Sergei is interested in understanding the evolution of genes underlying autoimmune conditions. His research integrates techniques from population genetics and medical genetics. He integrates multiple layers of genome annotations: signals of selection, fine-mapped causal SNPs for autoimmune conditions, and various layers of functional annotations (chromatin accessibility, eQTLs, etc).
Anastasia is interested in understanding molecular mechanisms underlying autoimmune conditions. Her work is focused on fine-mapping causal SNPs for autoimmune conditions by integrating functional annotations.
Alexander is interested in reconstructing the genetic history of Russians and related Slavic-speaking populations using techniques based on Ancestral Recombination Graphs. More broadly, he is interested in how natural selection shaped the distribution of immune gene variants across populations and how genetic variation translates into similarities at the protein structure level.
Alena is interested in reconstructing genetic history of Russians by combining ancient DNA techniqies and novel tools based on Ancestral Recombination Graphs.
Dina Sabirova, Ms in Applied Mathematics and Informatics.
Supervisor: Mikhail Rayko, Sirius University of Science and Technology
Co-supervisor: Bayazit Yunusbayev, Saint Petersburg State University
Dina's research project was aimed at understanding Megasphaera elsdenii functional capacity using comparative genomics. M. elsdenii increases in the inflamed intestine in diverse animals and humans. To infer functional capacity of this bug, Dina did bioinformatic analyses to assemble bacterial genomes, annotate genes and pathways, and run comparative genomic analyses.
Southern Federal University
Anna's research focuses on microbial host interaction in health and disease. Anna earned her bachelor’s degree at Southern Federal University (Rostov-on-Don, Russia) and has a background in molecular biology and microbiology. She joined my group to do a Masters degree. Her Master's project was focused on the human gut microbiome in autoimmune disease.
Saint Petersburg State Chemical Pharmaceutical University
Darya's research focuses on Mycobacterium tuberculosis phylogeny and the role that the host-microbiome plays in disease susceptibility in tuberculosis. Darya joined my group to do a master's degree. Her Master's project was focused on the human gut microbiome in tuberculosis patients.
Grigory's research focuses on host-microbiome interaction in the context of host inflammation. In his Master's project, Grigory was reconstructing metabolic pathways from inferred genes. Inferred genes were detected from the bulk metagenomic sequences derived from the human gut microbiome.