PUBLICATIONS

2024

Vaux F, Parvizi E, Duffy GA, Dutoit L, Craw D, Waters JM, Fraser CI. (2024). First genomic snapshots of recolonising lineages following a devastating earthquake. Ecography [early access], e07117. 10.1111/ecog.07117

Supplementary material hosted with main text Supplementary Sample details, data and code (GitHub) NCBI Sequence read archive Ecography blog post Issue cover Twitter thread

Pearman WS, Morales SE, Vaux F, Gemmell NJ, Fraser CI. (2024). Host population crashes disrupt the diversity of associated marine microbiomes. Environmental Microbiology 26, e16611. 10.1111/1462-2920.16611

Supplementary material hosted with main text Preprint

2023

Vaux F, Fraser CI, Craw D, Read S, Waters JM. (2023). Integrating kelp genomic analyses and geological data to reveal ancient earthquake impacts. Journal of the Royal Society Interface 20, 20230105. 10.1098/rsif.2023.0105

Supplementary material hosted with main text All Appendices and Supplementary Data and Code (GitHub) NCBI Sequence read archive Press release

Vaux F, Dutoit L, Fraser CI, Waters JM. (2023). Genotyping-by-sequencing for biogeography. Journal of Biogeography 50, 262-281. 10.1111/jbi.14516

Supplementary material hosted with main text Twitter thread

2022

Vaux F, Parvizi E, Craw D, Fraser CI, Waters JM. (2022). Parallel recolonisations generate distinct genomic sectors in kelp following high magnitude earthquake disturbance. Molecular Ecology 38, 4818-4831. 10.1111/mec.16535

Supplementary material (Appendices A and B) hosted with main text All Appendices and Supplementary data (Dryad) Code (GitHub) NCBI Sequence read archive Twitter thread

Thomas LJ, Milotic M, Vaux F, Poulin R. (2022). Lurking in the water: testing eDNA metabarcoding as a tool for ecosystem-wide parasite detection. Parasitology 149, 261-269. 10.1017/S0031182021001840

Supplementary material hosted with main text Cambridge Core blog post

2021

Song W, Xie Y, Sun M, Li X, Fitzpatrick CK, Vaux F, O’Malley KG, Zhang Q, Qi J, He Y. (2021). A duplicated amh is the master sex-determining gene for Sebastes rockfish in the Northwest Pacific. Open Biology. 10.1098/rsob.210063

Supplementary material hosted with main text NCBI Sequence read archive

Vaux F, Craw D, Fraser CI, Waters JM. (2021). Northward range extension for Durvillaea poha bull kelp: response to tectonic disturbance? Journal of Phycology 57, 1411-1418. 10.1111/jpy.13179

Appendices and Supplementary data (Dryad) Code (GitHub) NCBI Sequence read archive Press release Twitter thread Issue cover

Vaux F, Bohn S, Hyde JR, O'Malley KGO. (2021). Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation. Evolutionary Applications 14, 1343-1364. 10.1111/eva.13202

Appendices and Supplementary data (Dryad) Code (GitHub) NCBI Sequence read archive Press release Twitter thread

2020

Vaux F, Gemmell MR, Hills SFK, Marshall BA, Beu AG, Crampton JSC, Trewick SA, Morgan-Richards M. (2020). Lineage identification affects estimates of evolutionary mode in marine snails. Systematic Biology 69, 1106-1121. 10.1093/sysbio/syaa018

Appendix and Supplementary data (Dryad) Code (GitHub) NCBI Sequence read archive Twitter thread

Vaux F, Aycock HM, Bohn S, Rasmuson LK, O’Malley KG. Sex identification PCR-RFLP assay tested in eight species of Sebastes rockfish. (2020). Conservation Genetics Resources 12, 541-544. 10.1007/s12686-020-01150-y

Supplementary data (Dryad) Tweet

2019

Vaux F, Rasmuson LK, Kautzi LA, Rankin PS, Blume MTO, Lawrence KA, Bohn S, O’Malley KG. (2019). Sex matters: otolith shape and genomic variation in deacon rockfish (Sebastes diaconus). Ecology and Evolution 9, 13153-13173. 10.1002/ece3.5763

Supplementary data (Dryad) Code (GitHub) NCBI Sequence read archive Twitter thread

O’Malley KG, Vaux F, Black AN. (2019). Characterizing neutral and adaptive genomic differentiation in a changing climate: the most northerly freshwater fish as a model. Ecology and Evolution 9, 2004-2017. 10.1002/ece3.4891

Supplementary material hosted with main text Supplementary data (Dryad)

Vaux F, Daly EE, Morgan-Richards M, Trewick SA. (2019). Tuatara and a new morphometric dataset for Rhynchocephalia: a response to Herrera-Flores et al. Palaeontology 62, 321-334. 10.1111/pala.12402

Supplementary data (Dryad) Code (GitHub)

2018

Gemmell MR, Trewick SA, Crampton JS, Vaux F, Hills SFK, Daly EE, Marshall BA, Beu AG, Morgan-Richards M. (2018). Genetic structure and shell shape variation within a rocky shore whelk suggest both diverging and constraining selection with gene flow. Biological Journal of the Linnean Society 125, 827-843. 10.1093/biolinnean/bly142

Supplementary material hosted with main text

Vaux F, Crampton JSC, Trewick SA, Marshall BA, Beu AG, Hills SFK, Morgan-Richards M. (2018). Evolutionary lineages of marine snails identified using molecular phylogenetics and geometric morphometric analysis of shells. Molecular Phylogenetics and Evolution 127, 626-637. 10.1016/j.ympev.2018.06.009

Supplementary material hosted with main text Supplementary data (Mendeley) Code (GitHub) Full supplement (download here)

Marshall BA, Hills SFK, Vaux F. (2018). A new species of Penion P. Fischer, 1884 from northern New Zealand (Mollusca: Neogastropoda: Buccinoidea). Molluscan Research 38, 238-242. 10.1080/13235818.2017.1420398

Vaux F, Hills SFK, Marshall BA, Trewick SA, Morgan-Richards M. (2018). Genome statistics and phylogenetic reconstructions for Southern Hemisphere whelks (Gastropoda: Buccinulidae). Data in Brief 16, 172-181. 10.1016/j.dib.2017.11.021

Published supplement for a previous paper

2017

Vaux F, Hills SFK, Marshall BA, Trewick SA, Morgan-Richards M. (2017). A phylogeny of Southern Hemisphere whelks (Gastropoda: Buccinulidae) and concordance with the fossil record. Molecular Phylogenetics and Evolution 114, 367-381. 10.1016/j.ympev.2017.06.018

Supplementary data hosted with main text Supplementary material Audioslides (YouTube) Audioslides (Elsevier)

Vaux F, Marshall BA, Crampton JS, Trewick SA, Morgan-Richards M. (2017). Geometric morphometric analysis reveals that the shells of male and female siphon whelks Penion chathamensis are the same size and shape. Molluscan Research 37, 194-201. 10.1080/13235818.2017.1279474

Supplementary material hosted with main text Code (GitHub) Issue cover

Vaux F, Trewick SA, Morgan-Richards M. (2017). Speciation through the looking-glass. Biological Journal of the Linnean Society 120, 480-488. 10.1111/bij.12872

Supplementary material hosted with main text

2016

Vaux F, Trewick SA, Morgan-Richards M. (2016). Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary. Biological Journal of the Linnean Society 117, 165-176. 10.1111/bij.12665