Publications

Marco-Ramell, A, M Palau-Rodriguez, A Alay, S Tulipani, M Urpi-Sarda, A Sanchez-Pla, and C Andres-Lacueva. ‘Evaluation and Comparison of Bioinformatic Tools for the Enrichment Analysis of Metabolomics Data’. BMC Bioinformatics, 2018. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-2006-0.

Fissolo, Nicolas, Béatrice Pignolet, Clara Matute-Blanch, Juan Carlos Triviño, Berta Miró, Miriam Mota, Santiago Perez-Hoyos, et al. ‘Matrix Metalloproteinase 9 Is Decreased in Natalizumab-Treated Multiple Sclerosis Patients at Risk for Progressive Multifocal Leukoencephalopathy’. Annals of Neurology 82, no. 2 (August 2017): 186–95. https://doi.org/10.1002/ana.24987.

Tulipani, S, M Palau-Rodriguez, A Miñarro Alonso, F Cardona, A Marco-Ramell, B Zonja, A de Alda M.: Muñoz-Garach, A Sanchez-Pla, F J Tinahones, and C Andres-Lacueva. ‘Biomarkers of Morbid Obesity and Prediabetes by Metabolomic Profiling of Human Discordant Phenotypes’. Clinica Chimica Acta 463 (2016): 53–61. http://www.sciencedirect.com/science/article/pii/S0009898116304028.

Julián, M.T., N. Alonso, R. Colobran, A. Sánchez, A. Miñarro, I. Pujol-Autonell, J. Carrascal, et al. ‘CD26/DPPIV Inhibition Alters the Expression of Immune Response-Related Genes in the Thymi of NOD Mice’. Molecular and Cellular Endocrinology 426 (2016). https://doi.org/10.1016/j.mce.2016.02.014.

Canto, E., M. Tintore, L.M. Villar, C. Costa, R. Nurtdinov, J.C. Alvarez-Cermeno, G. Arrambide, et al. ‘Chitinase 3-like 1: Prognostic Biomarker in Clinically Isolated Syndromes’. Brain 138, no. 4 (2015). https://doi.org/10.1093/brain/awv017.

Bazzocco, S., H. Dopeso, F. Carton-Garcia, I. Macaya, E. Andretta, F. Chionh, P. Rodrigues, et al. ‘Highly Expressed Genes in Rapidly Proliferating Tumor Cells as New Targets for Colorectal Cancer Treatment’. Clinical Cancer Research 21, no. 16 (2015). https://doi.org/10.1158/1078-0432.CCR-14-2457.

Aso, E, A Sánchez-Pla, E Vegas-Lozano, R Maldonado, and I Ferrer. ‘Cannabis-Based Medicine Reduces Multiple Pathological Processes in A\x{03b2}PP/PS1 Mice’. Journal of Alzheimer’s Disease 3, no. 43 (2015): 977–91.

Pujol-Autonell, I., A. Serracant-Prat, M. Cano-Sarabia, R.M. Ampudia, S. Rodriguez-Fernandez, A. Sanchez, C. Izquierdo, et al. ‘Use of Autoantigen-Loaded Phosphatidylserine-Liposomes to Arrest Autoimmunity in Type 1 Diabetes’. PLoS ONE 10, no. 6 (2015). https://doi.org/10.1371/journal.pone.0127057.

Armand-Ugón, M., E. Aso, J. Moreno, M. Riera-Codina, A. Sánchez, E. Vegas, and I. Ferrer. ‘Memory Improvement in the AβPP/PS1 Mouse Model of Familial Alzheimer’s Disease Induced by Carbamylated-Erythropoietin Is Accompanied by Modulation of Synaptic Genes’. Journal of Alzheimer’s Disease 45, no. 2 (2015). https://doi.org/10.3233/JAD-141389.

E., Cantó, Tintoré M., Villar LM., Nurtdinov R , Costa C1, , Álvarez-Cermeño JC., , Arrambide G., , Reverter F., et al. ‘Chitinase 3-like 1: Prognostic Biomarker in Clinically Isolated Syndromes’. Brain, 2015.

Navarro, Alba, Guillem Clot, Alejandra Martinez-Trillos, Itziar Salaverria, David Martin-Garcia, Nicola Trim, Veronica Fernandez, et al. ‘Gene Expression Profiling Signatures Allow the Identification of Unclassifiable Leukemic B-Cell Lymphoid Neoplasms’. Blood 125, no. 23 (2015): 3902-.

Gregori, J., M. Salicrú, E. Domingo, A. Sanchez, J.I. Esteban, F. Rodríguez-Frías, and J. Quer. ‘Inference with Viral Quasispecies Diversity Indices: Clonal and NGS Approaches’. Bioinformatics 30, no. 8 (2014). https://doi.org/10.1093/bioinformatics/btt768.

Cubero, M., J. Gregori, J.I. Esteban, D. García-Cehic, M. Bes, C. Perales, E. Domingo, et al. ‘Identification of Host and Viral Factors Involved in a Dissimilar Resolution of a Hepatitis C Virus Infection’. Liver International 34, no. 6 (2014). https://doi.org/10.1111/liv.12362.

Cuadros, T, E Trilla, E Sarro, M R Vilà, J Vilardell, I de Torres, M Salcedo, et al. ‘HAVCR/KIM-1 Activates the IL-6/STAT-3 Pathway in ccRCC and Determines Tumor Progression and Patient Outcome’. Cancer Research, 2014.

Gregori, J., O. Méndez, T. Katsila, M. Pujals, C. Salvans, L. Villarreal, J. Arribas, J. Tabernero, A. Sánchez, and J. Villanueva. ‘Enhancing the Biological Relevance of Secretome-Based Proteomics by Linking Tumor Cell Proliferation and Protein Secretion’. Journal of Proteome Research 13, no. 8 (2014). https://doi.org/10.1021/pr500304g.

Cubero, Maria, Josep Gregori, Juan I Esteban, Damir García-Cehic, Marta Bes, Celia Perales, Esteban Domingo, et al. ‘Identification of Host and Viral Factors Involved in a Dissimilar Resolution of a Hepatitis C Virus Infection’. Liver International, 2013.

Serino, M., J.M. Fernández-Real, E.G. Fuentes, M. Queipo-Ortuño, J.M. Moreno-Navarrete, A. Sánchez, R. Burcelin, and F. Tinahones. ‘The Gut Microbiota Profile Is Associated with Insulin Action in Humans’. Acta Diabetologica 50, no. 5 (2013). https://doi.org/10.1007/s00592-012-0410-5.

Fernández Bustamante, Marta, J Rio, Z Castro, Alex Sánchez, Xavier Montalban, and M Comabella. ‘Cellular Immune Responses in Multiple Sclerosis Patients Treated with Interferon-Beta’. Clinical and Experimental Immunology 171, no. 3 (2013): 243–46.

Gregori, J., L. Villarreal, A. Sánchez, J. Baselga, and J. Villanueva. ‘An Effect Size Filter Improves the Reproducibility in Spectral Counting-Based Comparative Proteomics’. Journal of Proteomics 95 (2013). https://doi.org/10.1016/j.jprot.2013.05.030.

Serino, M., J.M. Fernández-Real, E. Garcia-Fuentes, M. Queipo-Ortuño, J.M. Moreno-Navarrete, A. Sánchez, R. Burcelin, and F. Tinahones. ‘Erratum: The Gut Microbiota Profile Is Associated with Insulin Action in Humans (Acta Diabetol (DOI 10.1007/s00592-012-0410-5))’. Acta Diabetologica 50, no. 5 (2013). https://doi.org/10.1007/s00592-012-0425-y.

Bustamante, M.F., J. Rio, Z. Castro, A. Sánchez, X. Montalban, and M. Comabella. ‘Cellular Immune Responses in Multiple Sclerosis Patients Treated with Interferon-Beta’. Clinical and Experimental Immunology 171, no. 3 (2013). https://doi.org/10.1111/cei.12016.

Pujol-Autonell, Irma, Rosa-Maria Ampudia, Raquel Planas, Silvia Marin-Gallen, Jorge Carrascal, Alex Sanchez, Ana Marin, et al. ‘Efferocytosis Promotes Suppressive Effects on Dendritic Cells through Prostaglandin E2 Production in the Context of Autoimmunity’. PLoS One 8, no. 5 (2013): e63296-.

Comabella, Manuel, Ana B Caminero, Sunny Malhotra, Luis Agulló, Oscar Fernández, Ferran Reverter, Koen Vandenbroeck, et al. ‘TNFRSF1A Polymorphisms rs1800693 and rs4149584 in Patients with Multiple Sclerosis’. Neurology 80, no. 22 (2013): 2010–16.

Roig Vilaseca, D, M Núñez, E Núñez, J L del Val, A Sánchez-Pla, and M Bonet Llorach. ‘Characterization of Patients with Rheumatoid Arthritis according to the Health Care Level’. Reumatología Clínica 15, no. 3 (2013): 258–65.

Bustamante, M. F., J. Rio, Z. Castro, A. Sánchez, X. Montalban, and M. Comabella. ‘Cellular Immune Responses in Multiple Sclerosis Patients Treated with Interferon-Beta’. Clinical & Experimental Immunology 171, no. 3 (March 2013): 243–46. https://doi.org/10.1111/cei.12016.

Martínez, C., M. Vicario, L. Ramos, B. Lobo, J.L. Mosquera, C. Alonso, A. Sánchez, et al. ‘The Jejunum of Diarrhea-Predominant Irritable Bowel Syndrome Shows Molecular Alterations in the Tight Junction Signaling Pathway That Are Associated with Mucosal Pathobiology and Clinical Manifestations’. American Journal of Gastroenterology 107, no. 5 (2012). https://doi.org/10.1038/ajg.2011.472.

Mattos-Arruda, Leticia De, Javier Cortes, Claudia Aura, Mafalda Oliveira, Alejandro Navarro, Ginevra Caratu, Alex Sanchez-Pla, et al. ‘Analysis of the Intratumoral Heterogeneity of PIK3CA Mutant Alleles in Breast Cancer (BC): Implications for the Luminal (LUM) Phenotype’. Journal of Clinical Oncology 30, no. 15 (2012).

Rodriguez-Fr\x0131as, F, D Tabernero, J Quer, J I Esteban, I Ortega, E Domingo, M Cubero, et al. ‘Ultra-Deep Pyrosequencing Detects Conserved Genomic Sites and Quantifies Linkage of Drug-Resistant Amino Acid Changes in the Hepatitis B Virus Genome’. PLoS One 7, no. 5 (2012): e37874-.

Serino, M, J M Fernández-Real, E G Fuentes, M Queipo-Ortuño, J M Moreno-Navarrete, Á Sánchez, Remy Burcelin, and F Tinahones. ‘The Gut Microbiota Profile Is Associated with Insulin Action in Humans’. Acta Diabetologica, 2012, 1–9. http://link.springer.com/article/10.1007%2Fs00592-012-0410-5.

Martinez, C, M Vicario, L Ramos, B Lobo, J L Mosquera, C Alonso, A Sanchez, et al. ‘The Jejunum of Diarrhea-Predominant Irritable Bowel Syndrome Shows Molecular Alterations in the Tight Junction Signaling Pathway That Are Associated with Mucosal Pathobiology and Clinical Manifestations’. American Journal of Gastroenterology 107, no. 5 (2012): 736–46.

Rodriguez-Frías, F., D. Tabernero, J. Quer, J.I. Esteban, I. Ortega, E. Domingo, M. Cubero, et al. ‘Ultra-Deep Pyrosequencing Detects Conserved Genomic Sites and Quantifies Linkage of Drug-Resistant Amino Acid Changes in the Hepatitis B Virus Genome’. PLoS ONE 7, no. 5 (2012). https://doi.org/10.1371/journal.pone.0037874.

Botta-Orfila, T, A Sànchez-Pla, M Fernández, F Carmona, M Ezquerra, and E Tolosa. ‘Brain Transcriptomic Profiling in Idiopathic and LRRK2-Associated Parkinson’s Disease’. Brain Research 1466 (2012): 152–57. http://www.sciencedirect.com/science/article/pii/S0006899312009341.

Botta-Orfila, T, E Tolosa, E Gelpi, A Sànchez-Pla, M J Martí, F Valldeoriola, M Fernández, F Carmona, and M Ezquerra. ‘Microarray Expression Analysis in Idiopathic and LRRK2-Associated Parkinson’s Disease’. Neurobiology of Disease 45, no. 1 (2012): 462–68. http://www.sciencedirect.com/science/article/pii/S0969996111003032.

Sánchez Pla, A, F Reverter, M C de Villa, and M Comabella. ‘Transcriptomics: mRNA and Alternative Splicing’. Journal of Neuroimmunology, 2012.

Homs, M., M. Buti, D. Tabernero, J. Quer, A. Sanchez, N. Corral, R. Esteban, and F. Rodriguez-Frias. ‘Quasispecies Dynamics in Main Core Epitopes of Hepatitis B Virus by Ultra-Deep-Pyrosequencing’. World Journal of Gastroenterology 18, no. 42 (2012). https://doi.org/10.3748/wjg.v18.i42.6096.

Mattos-Arruda, L De, J Cortes, A Sanchez-Pla, C Aura, V Ortega, J Jimenez, C Saura, J Tabernero, J Seoane, and A Vivancos. ‘ASSESSMENT OF THE INTRATUMORAL HETEROGENEITY IN METASTATIC BREAST CANCER (MBC) THROUGH THE ANALYSIS OF THE FREQUENCY OF PIK3CA MUTANT ALLELES’. Annals of Oncology 23 (2012): 19–20.

Sánchez, A., J. Fernández-Real, E. Vegas, F. Carmona, J. Amar, R. Burcelin, M. Serino, et al. Multivariate Methods for the Integration and Visualization of Omics Data. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 6620 LNBI, 2012. https://doi.org/10.1007/978-3-642-28062-7_4.

Ocaña, J, M P Sánchez, J Ll. Carrasco, and A Sánchez. ‘On Equivalence and Bioequivalence Testing.’ Sort (Statistics and Operations Research Transactions) 32, no. 2 (2011): 151–76. http://www.raco.cat/index.php/SORT/article/view/144068.

Salicrú, Miquel, Jordi Ocaña, and Alex Sánchez-Pla. ‘Comparison of Lists of Genes Based on Functional Profiles’. BMC Bioinformatics 12, no. 1 (16 October 2011): 401. https://doi.org/10.1186/1471-2105-12-401.

Tortosa, R., X. Castells, E. Vidal, C. Costa, M. Ruiz De Villa, A. Sánchez, A. Barcelá, J. Torres, M. Pumarola, and J. Arĩo. ‘Central Nervous System Gene Expression Changes in a Transgenic Mouse Model for Bovine Spongiform Encephalopathy’. Veterinary Research 42, no. 1 (2011). https://doi.org/10.1186/1297-9716-42-109.

Salicrú, Miquel, Jordi Ocaña, and Alex Sánchez-Pla. ‘Comparison of Lists of Genes Based on Functional Profiles’. BMC Bioinformatics 12, no. 1 (2011): 401. https://doi.org/10.1186/1471-2105-12-401.

Camiña-Tato, M., C. Morcillo-Suárez, M.F. Bustamante, I. Ortega, A. Navarro, A. Muntasell, M. López-Botet, et al. ‘Gender-Associated Differences of Perforin Polymorphisms in the Susceptibility to Multiple Sclerosis. (The Journal of Immunology (2010) 185, (5392-5404))’. Journal of Immunology 187, no. 3 (2011). https://doi.org/10.4049/jimmunol.1190036.

Rigau, M., I. Ortega, M.C. Mir, C. Ballesteros, M. Garcia, M. Llauradõ, E. Colás, et al. ‘A Three-Gene Panel on Urine Increases PSA Specificity in the Detection of Prostate Cancer’. Prostate 71, no. 16 (2011). https://doi.org/10.1002/pros.21390.

Fernández-Real, J M, S del Pulgar, E Luche, J M Moreno-Navarrete, A Waget, M Serino, E Sorianello, et al. ‘CD14 Modulates Inflammation-Driven Insulin Resistance’. Diabetes 60, no. 8 (2011): 2179–86. http://diabetes.diabetesjournals.org/lookup/suppl/doi:10.2337/db10-1210/-/DC1.

Planas, R., J. Carrillo, A. Sanchez, M.C. Ruiz De Villa, F. Nuñez, J. Verdaguer, R.F.L. James, R. Pujol-Borrell, and M. Vives-Pi. ‘Gene Expression Profiles for the Human Pancreas and Purified Islets in Type 1 Diabetes: New Findings at Clinical Onset and in Long-Standing Diabetes’. Clinical and Experimental Immunology 159, no. 1 (2010). https://doi.org/10.1111/j.1365-2249.2009.04053.x.

Rigau, M., J. Morote, M.C. Mir, C. Ballesteros, I. Ortega, A. Sanchez, E. Colás, et al. ‘PSGR and PCA3 as Biomarkers for the Detection of Prostate Cancer in Urine.’ The Prostate 70, no. 16 (2010).

Parra-Palau, J L, K Pedersen, V Peg, M Scaltriti, P Davide Angelini, M Escorihuela, S Mancilla, et al. ‘A Major Role of p95/611-CTF, a Carboxy-Terminal Fragment of HER2, in the Down-Modulation of the Estrogen Receptor in HER2-Positive Breast Cancers.’ Cancer Research 70, no. 21 (2010).

Sanchez, A., and J. Villanueva. ‘PI3K-Based Molecular Signatures Link High PI3K Pathway Activity with Low ER Levels in ER+ Breast Cancer’. Expert Review of Proteomics 7, no. 6 (2010). https://doi.org/10.1586/epr.10.103.

Fernández, S, J L Mosquera, L Alaña, A Sanchez-Pla, J Morote, Y Ramón, S Cajal, J Reventós, I de Torres, and R Paciucci. ‘PTOV1 Is Overexpressed in Human High-Grade Malignant Tumors.’ Virchows Archiv-An International Journal of Pathology Dec 23 (2010). http://www.springerlink.com/content/1h3688rk751v0217/fulltext.html.

Camiña-Tato, M., C. Morcillo-Suarez, M.F. Bustamante, I. Ortega, A. Navarro, A. Muntasell, M. López-Botet, et al. ‘Gender-Associated Differences of Perforin Polymorphisms in the Susceptibility to Multiple Sclerosis’. Journal of Immunology 185, no. 9 (2010). https://doi.org/10.4049/jimmunol.1000102.

Sánchez, A, and J Villanueva. ‘PI3K-Based Molecular Signatures Link High PI3K Pathway Activity with Low ER Levels in ER+ Breast Cancer.’ Expert Reviews in Proteomics 7, no. 6 (2010): 819–21. http://www.expert-reviews.com/doi/full/10.1586/epr.10.103?prevSearch=allfield%253A%2528Villanueva%2529&searchHistoryKey=.

Ruiz-Riol, M, M P Armengol Barnils, R Colobran Oriol, A Sánchez Pla, F Borràs Serres, A , Lucas-Martin, E Martínez Cáceres, and Pujol-Borrell R. ‘Analysis of the Cumulative Changes in Graves’ Disease Thyroid Glands Points to IFN Signature, Plasmacytoid DCs and Alternatively Activated Macrophages as Chronicity Determining Factors’. Journal of Autoimmunity, 2010, 23-.

Comabella, M., J.D. Lünemann, J. Río, A. Sánchez, C. López, E. Julià, M. Fernández, et al. ‘A Type I Interferon Signature in Monocytes Is Associated with Poor Response to Interferon-β in Multiple Sclerosis’. Brain 132, no. 12 (2009). https://doi.org/10.1093/brain/awp228.

Comabella, M, J D Lünemann, J Río1, A Sánchez, C López, E Julià, M Fernández, et al. ‘A Type I Interferon Signature in Monocytes Is Associated with Poor Response to Interferon-\x{03b2} in Multiple Sclerosis’. Brain 132, no. 12 (2009): 3353–65.

Aberg, A, J Fernandez-Vazquez, J D Cabrer-Panes, A Sanchez, and C Balsalobre. ‘Similar and Divergent Effects of ppGpp and DksA Deficiencies on Transcription in Escherichia Coli.’ Journal of Bacteriology 191, no. 10 (2009): 3226–36.

Åberg, A., J. Fernández-Vázquez, J.D. Cabrer-Panes, A. Sánchez, and C. Balsalobre. ‘Similar and Divergent Effects of ppGpp and DksA Deficiencies on Transcription in Escherichia Coli’. Journal of Bacteriology 191, no. 10 (2009). https://doi.org/10.1128/JB.01410-08.

Núñez, M., E. Núñez, A. Sanchez, J.L. del Val, M. Bonet, D. Roig, D. Muñoz, et al. ‘Patients’ Perceptions of Health-Related Quality of Life in Rheumatoid Arthritis’. Clinical Rheumatology 28, no. 10 (2009). https://doi.org/10.1007/s10067-009-1215-y.

Altirriba, J, A Barbera, H Del Zotto, B Nadal, S Piquer, A Sánchez-Pla, J J Gagliardino, and R Gomis. ‘Molecular Mechanisms of Tungstate-Induced Pancreatic Plasticity: A Transcriptomics Approach’. Bmc Genomics 10 (2009): 1–406. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2741493.

Llaverias, G., J. Pou, E. Ros, D. Zambón, M. Cofán, A. Sánchez, M. Vázquez-Carrera, R.M. Sánchez, J.C. Laguna, and M. Alegret. ‘Monocyte Gene-Expression Profile in Men with Familial Combined Hyperlipidemia and Its Modification by Atorvastatin Treatment’. Pharmacogenomics 9, no. 8 (2008). https://doi.org/10.2217/14622416.9.8.1035.

Mosquera, J L L, and A Sánchez-Pla. ‘SerbGO: Searching for the Best GO Tools.’ Nucleic Acids Research Jul 1, no. 36 (2008): W368–71.

Ocanã, J., M.P. Sánchez O., A. Sánchez, and J.L. Carrasco. ‘On Equivalence and Bioequivalence Testing’. SORT 32, no. 2 (2008).

Sánchez, A., M. Salicrú, and J. Ocaña. ‘Statistical Methods for the Analysis of High-Throughput Data Based on Functional Profiles Derived from the Gene Ontology’. Journal of Statistical Planning and Inference 137, no. 12 SPEC. ISS. (2007). https://doi.org/10.1016/j.jspi.2007.04.015.