Baduel P., Sasaki E*., The genetic basis of epigenetic variation and its consequences for adaptation. Curr Opin Plant Biol (2023) inpress

Sasaki E*., Gunis J., Reichardt-Gomez I., Nizhynska V., and Nordborg M*., Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes. bioRxiv. https://doi.org/10.1101/2022.02.09.479810 (2022); PLoS Genet. 18(9): e1010345  (2022). 

Satake A*., Nagahama A., Sasaki E., A cross-scale approach to unravel the molecular basis of plant phenology in temperate and tropical climates., New Phytol., 233:2340–2353 (2021)

Sasaki E., Köcher T., Filiault D., Nordborg M*., Revisiting a GWAS peak in Arabidopsis thaliana reveals possible confounding by genetic heterogeneity., Heredity, 127 (3): 245-252 (2021)

Sasaki E., Kawakatsu T., Ecker JR., and Nordborg M*. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. PLoS Genet. 15(12): e1008492 (2019)

†Sasaki E., †Frommlet F., Nordborg M*., The genetic architecture of the network underlying flowering time variation in Arabidopsis thaliana., G3-Genes Genom Genet, 8:3059-3068 (2018)

Kerdaffrec E., Filiault DL., Korte A., Sasaki E., Nizhynska V., Seren Ü., Nordborg M*., Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis., elife., e22502 (2016)

Horton MW., Willems G., Sasaki E., Koornneef M., Nordborg M*., The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana. Plant Cell Environ., 39:2570-2579 (2016)

†Kawakatsu T., †Huang SC., †Jupe F., †Sasaki E., Schmitz RJ., Urich MA., Castanon, R., Nery JR., Barragan C., He Y., Chen H., Dubin M., Lee C., Wang C., Bemm F., Becker C., O’Neil R., O’Malley RC., Quarless DX., The 1001 Genomes Consortium, Schork NJ, Weigel D., Nordborg N., Ecker JR*., Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions Resource. Cell, 166:492-505 (2016)  

Sasaki E., Zhang P., Atwell S., Meng D, Nordborg M*. "Missing" G x E Variation Controls Flowering Time in Arabidopsis thaliana. PLoS Genet., 11(10):e1005597 (2015)

Yoshida K, Sasaki E., Kamoun S. Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects. Front Plant Sci., 6:771 (2015)

Ito S., Nozoye T., Sasaki E., Imai M., Shiwa Y., Shibata-Hatta M., Ishige T., Fukui K., Ito K., Nakanishi H., Nishizawa NK., Yajima S., Asami T*., Strigolactone regulates anthocyanin accumulation, acid phosphatases production and plant growth under low phosphate condition in Arabidopsis., PLoS One, 10(3) e0119724 (2015)

Decelle J., Romac S., Sasaki E., Not F., Mahé F*., Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (radiolarians) assessed by high-throughput sequencing. PLoS One, 9(8) e104297 (2014)

†Fawcett JA, †Kado T., †Sasaki E., Takuno S., Yoshida K., Sugino RP, Kosugi S., Natsume S., Mitsuoka C., Uemura A., Takagi H., Abe A., Ishii T., Terauchi R., Innan H*., QTL map meets population genomics: an application to rice., PLoS One, 8(12) e83720 (2013)

Sasaki E*., Sugino RP., Innan H*., The linkage method: a novel approach for SNP detection and haplotype reconstruction from a single diploid individual using next-generation sequence data., Mol. Biol. Evol., 30:2187-2196 (2013)

Sasaki E., Ogura T., Takei K., Kojima M., Kitahata N., Sakakibara H., Asami T., Shimada Y*., Uniconazole, a cytochrome P450 inhibitor, inhibits trans-zeatin biosynthesis in Arabidopsis., Phytochemistry, 87:30-38 (2013)

Stotz HU, Jikumaru Y., Shimada Y., Sasaki E., Stingl N., Mueller MJ., Kamiya Y*., Jasmonate-Dependent and COI1-Independent Defense Responses against Sclerotinia sclerotiorum in Arabidopsis thaliana: Auxin Is Part of COI1-Independent Defense Signaling., Plant Cell Physiol., 52: 1941-1956 (2011)

Stotz HU, Sawada Y., Shimada Y., Hirai MY, Sasaki E., Krischke M., Brown PD, Saito K., Kamiya Y*., Role of Camalexin, Indole Glucosinolates, and Side Chain Modification of Glucosinolate-Derived Isothiocyanates in Defense of Arabidopsis against Sclerotinia sclerotiorum., Plant J., 67:81-93 (2011)

Sasaki E., Takahashi C., Asami T., Shimada Y., AtCAST, a tool for exploring gene expression similarities among DNA microarray experiments using networks., Plant Cell Physiol. 52: 169-180 (2011)

Soeno K., Goda H., Ishii T., Ogura T., Tachikawa T., Sasaki E., Yoshida S., Fujioka S., Asami T., Shimada Y*., Auxin-biosynthesis inhibitors, identified by genomics-based approach, provide insights into auxin biosynthesis., Plant, Plant Cell Physiol. 51: 524-536 (2010) 

Matsuda F., Yokota-Hirai M., Sasaki E., Akiyama K., Yonekura-Sakakibara K., Provart NJ., Sakurai T., Shimada Y., Saito K*., Phytochemical atlas of Arabidopsis thaliana development. Plant physiol., 152: 566-578 (2010)

Mashiguchi K., Sasaki E., Shimada Y., Nagae M., Ueno K., Nakano T., Yoneyama K., Suzuki Y., Asami T*., Feedback-regulation of strigolactone biosynthetic genes and strigolactone-regulated genes in Arabidopsis., Biosci. Biotechnol. Biochem. 14: 364-372 (2009)

†Goda H., †Sasaki E., Akiyama K., Maruyama-Nakashita A., Nakabayashi K., Li W., Ogawa M., Yamauchi Y., Preston J., Aoki K., Kiba T., Takatsuto S., Fujioka S., Asami T., Nakano T., Kato H., Mizuno T., Sakakibara H., Yamaguchi S., Nambara E., Kamiya Y., Takahashi H., Yokota-Hirai M., Sakurai T., Shinozaki K., Saito K., Yoshida S. and Shimada Y*., The AtGenExpress hormone and chemical treatment dataset: experimental design, data evaluation, model data analysis and data access, Plant J. 55: 526-542 (2008)