Publications

<*; Corresponding author>

1. Imchang Lee, Jae-Won Jo, Heung-Jeong Woo, Ki Tae Suk, Seung Soon Lee, Bong-Soo Kim*. (2024) Proton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome. Gut Microbes. 16(1), 2341635.

2. Joon-Young Park, Jae-Won Jo, Yu-Jeong An, Jin-Jae Lee, Bong-Soo Kim*. (2023) Alterations in sea urchin (Mesocentrotus nudus) microbiota and their potential contribution to host according to barren severity. npj Biofilms and Microbiomes. 9, 83.

3. Jinwoo Kim, Yoon Mee Park, So-Yeon Lee, Bong-Soo Kim, Yun Kyung Lee, Dong-Woo Lee, Myung Hee Nam, Soo-Jong Hong. (2023) Metabolomics revealed alterations in serum lipid metabolite levels in childhood atopic dermatitis. Pediatric Allergy and Immunology. 34, e14021.

4. Kyoung Su Kim, Eunike Tiffany, Ji-Young Lee, Ara Oh, Hyeon-Su Jin, Ji-Sun Kim, Jung-Sook Lee, Myung Hee Nam, Soo-Jong Hong, Sowon Park, Hong Koh, Bong-Soo Kim, Yun Kyung Lee, Dong-Woo Lee. (2023) Genome-wide multi-omics analysis reveals the nutrient-dependent metabolic features of mucin-degrading gut bacteria. Gut Microbes. 15(1), 2221811.

5. Ji Eun Kim, Hoonsik Nam, Ji In Park, Hyunjeong Cho, Jangwook Lee, Hyo-Eun Kim, Dong Ki Kim, Kwon Wook Joo, Yon Su Kim, Bong-Soo Kim, Sunghyouk Park, Hajeong Lee. (2023) Gut microbial genes and metabolism for methionine and branched-chain amino acids in diabetic nephropathy. Microbiology Spectrum. 11(2), e02344-22.

6. Yoon Jeong Cho, Sohyun Park, Sung Soo Kim, Hyo Jin Park, Jang Won Son, Tae Kyung Lee, Sangmo Hong, Jee-Hyun Kang, Seon Mee Kim, Yang-Hyun Kim, Won Jun Kim, Young Eun Seo, Yoosuk An, Sang Youl Rhee, Suk Chon, Sookyung Jeon, Kyungho Park, Bong-Soo Kim, Chang Beom Lee, Kyoung-Kon Kim, Jung Eun Lee. (2022) The Gangwon obesity and metabolic syndrome study: methods and initial baseline data. Journal of Obesity & Metabolic Syndrome. 31, 303-312. 

7. Imchang Lee, Olga Podolich, Bertram Brenig, Sandeep Tiwari, Vasco Azevedo, Daniel Santana de Carvalho, Ana Paula Trovatti Uetanabaro, Aristóteles Góes-Neto, Khalid J. Alzahrani, Oleg Reva, Natalia Kozyrovska, Jean-Pierre de Vera, Debmalya Barh, Bong-Soo Kim*. (2022) Metagenome-assembled genomes of Komagataeibacter from Kombucha exposed to Mars-like conditions reveal the secrets in tolerating extraterrestrial stresses. Journal of Microbiology and Biotechnology. 32(8), 967-975.

8. Min-Jung Lee, Yoon Mee Park, Byunghyun Kim, In Hwan Tae, Nam-Eun Kim, Marina Pranata, Taewon Kim, Sungho Won, Nam Joo Kang, Yun Kyung Lee, Dong-Woo Lee, Myung Hee Nam, Soo-Jong Hong, Bong-Soo Kim*. (2022) Disordered development of gut microbiome interferes with the establishment of the gut ecosystem during early childhood with atopic dermatitis. Gut Microbes. 14(1), e2068366. 

9. Jeong-Hyun Kim, Seung-Hwa Lee, Mi-Jin Kang, Yoon Mee Park, Bong-Soo Kim, So-Yeon Lee, Shin Ah Kim, Sun-Goo Hwang, Min Jee Park, Kun Baek Song, Eom Ji Choi, Sungsu Jung, Soo-Jong Hong. (2022) Host-microbial interactions between PTGR2 and Bifidobacterium in the early life gut of atopic dermatitis children. Pediatric Allergy and Immunology. 33, e13724.

10. Ji-Young Lee, Hyeon-Su Jin, Kyoung Su Kim, Je-Hyun Baek, Bong-Soo Kim, Dong-Woo Lee. (2022) Nutrient-specific proteomic analysis of the mucin degrading bacteria Akkermansia muciniphila. Proteomics. 22(3), e2100125.

11. Ziyuan Jiang, Jiajin Li, Nahyun Kong, Jeong-Hyun Kim, Bong-Soo Kim, Min-Jung Lee, Yoon Mee Park, So-Yeon Lee, Soo-Jong Hong, Jae Hoon Sul. (2022) Accurate diagnosis of atopic dermatitis by combining transcriptome and microbiota data with supervised machine learning. Scientific Reports. 12, 290.

12. Hyo-Eun Kim, Jongjin Kim, Sejung Maeng, Bumjo Oh, Ki-Tae Hwang, Bong-Soo Kim*. (2021) Microbiota of breast tissue and its potential association with regional recurrence of breast cancer in Korean women. Journal of Microbiology and Biotechnology. 31, 1643-1655.

13. David Broderick, David W Waite, Robyn Marsh, Carlos A Camargo, Paul Cardenas, Anne B Chang, William Osmond Charles Cookson, Leah Cuthbertson, Wenkui Dai, Mark Lloyd Everard, Alain Gervaix, J Kirk Harris, Kohei Hasegawa, Lucas R Hoffman, Soo-Jong Hong, Laurence Josset, Matthew S Kelly, Bong-Soo Kim, Yong Kong, Shuai Cheng Li, Jonathan Mansbach, Asuncion Mejias, George A O'toole, Laura Paalanen, Marcos Perez Losada, Melinda M Pettigrew, Maxime Pichon, Octavio Ramilo, Lasse Ruokolainen, Olga Sakwinska, Patrick Seed, Christopher J Van Der Gast, Brandie Wagner, Hana Yi, Edith T Zemanick, Yuejie Zheng, Naveen Pillarisetti, Mike Taylor. (2021) Bacterial signatures of paediatric respiratory disease: an individual participant data meta-analysis. Frontiers in Microbiology. 12, 711134. 

14. Purevsuren Losol, Sae-Hoon Kim, Soyeon Ahn, Sejoon Lee, Jun-Pyo Choi, Yong-Hyun Kim, Soo-Jong Hong, Bong-Soo Kim, Yoon-Seok Chang. (2021) Genetic variation in the TLR-related pathway and smoking exposure alter the upper airway microbiota in adult asthmatic patients. Allergy. 76(10); 3217-3220.

15. Imchang Lee, Debmalya Barh, Olga Podolich, Bertram Brenig, Sandeep Tiwari, Vasco Azevedo, Aristóteles Góes-Neto, Oleg Reva, Natalia Kozyrovska, Jean-Pierre de Vera, Bong-Soo Kim*.  (2021) Metagenome-assembled genome sequences obtained from reactivated kombucha microbial community exposed to Mars-like environment outside the international space station. Microbiology Resource Announcements. 10, e00549-21.

16. Jaehyun Park, Sharon M. Lutz, Seungil Choi, Sanghun Lee, Sangcheol Park, Kangjin Kim, Hosik Choi, Hansoo Park, So-Yeon Lee, Scott T. Weiss, Soo-Jong Hong, Bong-Soo Kim*, Sungho Won*. (2021) Multi-omics analyses implicate EARS2 in the pathogenesis of atopic dermatitis. Allergy. 76(8); 2602-2604.

17. Mi-Jin Kang, So-Yeon Lee, Yoon-Mee Park, Bong-Soo Kim, Min-Jung Lee, Jeong-Hyun Kim, Seonmi Jeong, Seung-Hwa Lee, Min Jee Park, Eun-Sang Rhee, Sungsu Jung, Jisun Yoon, Hyun-Ju Cho, Eun Lee, Song-I Yang, Dong In Suh, Kyung Won Kim, Youn Ho Sheen, Kangmo Ahn, Soo-Jong Hong. (2021) Interaction between IL-17 variants and Streptococcus in the gut contribute to the development of atopic dermatitis in infancy. Allergy Asthma & Immunology Research. 13, 404-419.

18. Jin-Jae Lee, Dongeun Yong, Ki Tae Suk, Dong Joon Kim, Heung-Jeong Woo, Seung Soon Lee*, Bong-Soo Kim*. (2021) Alteration of gut microbiota in carbapenem-resistant Enterobacteriaceae carriers during fecal microbiota transplantation according to decolonization periods. Microorganisms. 9, 352.

19. Ji Taek Hong, Min-Jung Lee, Sang Jun Yoon, Seok Pyo Shin, Chang Seok Bang, Gwang Ho Baik, Dong Joon Kim, Gi Soo Yoon, Min Jae Shin, Young Lim Ham, Ki Tae Suk*, Bong-Soo Kim*. (2021) Effect of Korean red ginseng on nonalcoholic fatty liver disease: an association of gut microbiota with liver function. Journal of Ginseng Research. 45, 316-324.

20. Ji Eun Kim, Hyo-Eun Kim, Hyunjeong Cho, Ji In Park, Min-Jung Kwak, Byung-Yong Kim, Seung Hee Yang, Jung Pyo Lee, Dong Ki Kim, Kwon Wook Joo, Yon Su Kim, Bong-Soo Kim, Hajeong Lee. (2020)  Effect of the similarity of gut microbiota composition between donor and recipient on graft function after living donor kidney transplantation. Scientific Reports. 10, 18881.

21. Ji In Park, Tae-Yoon Kim, Bumjo Oh, Hyunjeong Cho, Ji Eun Kim, Seong Ho Yoo, Jung Pyo Lee, Yon Su, Kim, Jongsik Chun, Bong-Soo Kim*, Hajeong Lee*. (2020) Comparative analysis of the tonsillar microbiota in IgA nephropathy and other glomerular diseases. Scientific Reports. 10, 16206.

22. Bo Kyoung Hwang, HeyLim Choi, Sang Ho Choi*, Bong-Soo Kim*. (2020) Analysis of microbiota structure and potential functions influencing spoilage of fresh beef meat. Frontiers in Microbiology. 11, 1657.

23. Ji Eun Kim, Hyo-Eun Kim, Ji In Park, Hyunjeong Cho, Min-Jung Kwak, Byung-Yong Kim, Seung Gee Yang, Jung Pyo Lee, Dong Ki Kim, Kwon Wook Joo, Yon Su Kim, Bong-Soo Kim*, Hajeong Lee*. (2020) The association between gut microbiota and uremia of chronic kidney disease. Microorganisms. 8, 907.

24. HyeLim Choi, Bo Kyoung Hwang, Bong-Soo Kim*, Sang Ho Choi*. (2020) Influence of pathogen contamination on beef microbiota under different storage temperature. Food Research International. 132, 109-118.

25. Yoon Mee Park, So-Yeon Lee, Mi-Jin Kang, Bong-Soo Kim, Min-Jung Lee, Sung Su Jung, Ji Sun Yoon, Hyun-Ju Cho, Eun Lee, Song-I Yang, Ju-Hee Seo, Hyo-Bin Kim, Dong In Suh, Youn Ho Shin, Kyung Won Kim, Kangmo Ahn, Soo-Jong Hong. (2020) Imbalance of gut Streptococcus, Clostridium, and Akkermansia determines the natural course of atopic dermatitis in infant. Allergy Asthma & Immunology Research. 12(2); 322-337.

26. Ji-Ung Park, Bumjo Oh, Jung Pyo Lee, Min-Ha Choi, Min-Jung Lee, Bong-Soo Kim*. (2019) Influence of microbiota on diabetic foot wound in comparison with adjacent normal skin based on the clinical features. Biomed Research International. 2019, 7459236.

27. Hyo-Eun Kim, Jin-Jae Lee, Min-Jung Lee, Bong-Soo Kim*. (2019) Analysis of microbiome in raw chicken meat from butcher shops and packaged products in South Korea to detect the potential risk of foodborne illness. Food Research International. 122, 517-527.

28. Bong-Soo Kim, Chong Won Choi, Hyoseung Shin, Seon-Pil Jin, Jung-Soo Bae, Mira Han, Eun Young Seo, Jongsik Chun, Jin Ho Chung. (2019) Comparison of the gut microbiota of centenarians in longevity villages of South Korea with those of other age groups. Journal of Microbiology and Biotechnology. 29(3); 429-440.

29. Jin-Jae Lee, Sae-Hoon Kim, Min-Jung Lee, Byung-Keun Kim, Woo-Jung Song, Heung-Woo Park, Sang-Heon Cho, Soo-Jong Hong, Yoon-Seok Chang*, Bong-Soo Kim*. (2019) Different upper airway microbiome and their functional genes associated with asthma in young adults and elderly individuals. Allergy. 74(4); 709-719.

30. Han Young Chung, Byungho Lee, Eun Jung Na, Kyu-Ho Lee, Sangryeol Ryu, Hyungjin Yoon, Ju-Hoon Lee, Hyeun Bum Kim, Heebal Kim, Hee Gon Jeong, Bong-Soo Kim*, Sang Ho Choi*. (2018) Potential survival and pathogenesis of a novel strain, Vibrio parahaemolyticus FORC_022, isolated from a soy sauce marinated crab by genome and transcriptome analyses. Frontiers in Microbiology. 9; 1504.

31. Joung-Soo Lim, Seung Hak Yang, Bong-Soo Kim, Eun Young Lee. (2018) Comparison of microbial communities in swine manure at various temperatures and storage times. Asian-Australasian Journal of Animal Sciences. 31(8); 1373-1380.

32. Bong-Soo Kim, Dong-Hun Han, Ho Lee, Bumjo Oh. (2018) Association of salivary microbiota with dental caries incidence with dentine involvement after 4 years. Journal of Microbiology and Biotechnology. 28(3); 454-464.

33. Min-Jung Lee, Mi-Jin Kang, So-Yeon Lee, Eun Lee, Kangjin Kim, Sungho Won, Dong In Suh, Kyung Won Kim, Young Ho Sheen, Kangmo Ahn, Bong-Soo Kim*, Soo-Jong Hong*. (2018) Perturbation of the gut microbiome genes in infants with atopic dermatitis according to feeding type. Journal of Allergy and Clinical Immunology. 141(4); 1310-1319. <Editors' choice of Issue>, <Selected latest research in AAAAI (American Academy of Allergy Asthma & Immunology)>

34. Bong-Soo Kim, Eun Lee, Min-Jung Lee, Mi-Jin Kang, Jisun Yoon, Huyn-Ju Cho, Jaehyun Park, Sungho Won, So Yeon Lee, Soo-Jong Hong. (2018) Different functional genes of upper airway microbiome associated with natural course of childhood asthma. Allergy. 73(3); 644-652. 

35. Jin Hee Park, Bong-Soo Kim*, Chul-Min Chon. (2018) Characterization of iron and manganese minerals and their associated microbiota in different mine sites to reveal the potential interactions of microbiota with mineral formation. Chemosphere. 191; 245-252.

36. Seung-Hak Yang, Hee Kwon Ahn, Bong-Soo Kim, Sun Sik Chang, Ki Yong Chung, Eun Mi Lee, Kwang Seok Ki, Eung Gi Kwon. (2017) Comparison of bacterial communities in leachate from decomposing bovine carcasses. Asian-Australasian Journal of Animal Sciences. 30(11); 1660-1666.

37. Tae-Yoon Kim, Jin-Jae Lee, Bong-Soo Kim*, Sang Ho Choi*. (2017) Whole-body microbiota of sea cucumber (Apostichopus japonicas) from South Korea for improved seafood management. Journal of Microbiology and Biotechnology. 27(10); 1753-1762.

38. Jin-Jae Lee, Tae-Yoon Kim, Sang Ho Choi, Bong-Soo Kim*. (2017) Analysis of the bacterial microbiome in the small octopus, Octopus variabilis, from South Korea to detect the potential risk of foodborne illness and to improve product management. Food Research International. 102; 51-60.

39. Suyeon Kim, Min-Jung Lee, Jin-Jae Lee, Sang Ho Choi, Bong-Soo Kim*. (2017) Analysis of microbiota of the swimming crab (Portunus trituberculatus) in South Korea to identify risk markers for foodborne illness. LWT-Food Science and Technology. 86; 483-491.

40. Jing-Hua Wang, Bong-Soo Kim, Kyungsun Han, Hojun Kim. (2017) Ephedra-treated donor-derived gut microbiota transplantation ameliorates high fat diet-induced obesity in rats. International Journal of Environmental Research and Public Health. 14(6); 555.

41. Yiseul Yeom, Bong-Soo Kim, Se-Jae Kim, Yuri Kim. (2016) Sasa quelpaertensis leaf extract regulates microbial dysbiosis by modulating the composition and diversity of the microbiota in dextran sulfate sodium-induced colitis mice. BMC Complementary and Alternative Medicine. 16; 481.

42. Bumjo Oh, Ji Won Kim, Bong-Soo Kim*. (2016) Changes in the functional potential of the gut microbiome following probiotic supplementation during Helicobacter pylori treatment. Helicobacter. 21(6); 493-503.

43. Han Young Chung, Kyu-Ho Lee, Sangryeol Ryu, Hyunjin Yoon, Ju-Hoon Lee, Hyeun Bum Kim, Heebal Kim, Hee Gon Jeong, Sang Ho Choi, Bong-Soo Kim*. (2016) Genome sequence of Bacillus cereus FORC_021, a food-borne pathogen isolated from a knife at a sashimi restaurant. Journal of Microbiology and Biotechnology. 26(12); 2030-2035.

44. Woo-Jun Sul, In-Soo Kim, Kalu I. Ekpeghere, Bongkeun Song, Bong-Soo Kim, Hong-Gi Kim, Jong-Tae Kim, Sung-Cheol Koh. (2016) Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1. Journal of Environmental Science and Health, Part A. 51(13); 1164-1172.

45. Min-Jung Lee, Jin-Jae Lee, Han Young Chung, Sang Ho Choi, Bong-Soo Kim*. (2016) Analysis of microbiota on abalone (Haliotis discus hannai) in South Korea for improved product management. International Journal of Food Microbiolgy. 234; 45-52.

46. Eun Lee, So-Yeon Lee, Mi-Jin Kang, Kangjin Kim, Sungho Won, Byoung-Ju Kim, Kil Young Choi, Bong-Soo Kim, Hyun-Ju Cho, Yeongho Kim, Song I. Yang, Soo-Jong Hong. (2016) Clostridia in the gut and onset of atopic dermatitis via eosinophilic inflammation. Annals of Allergy, Asthma & Immunology. 117(1); 91-92.e1.

47. Bumjo Oh, Jong Seung Kim, Meere Kweon, Bong-Soo Kim, In Sil Huh. (2016) Six-week diet correction for body weight reduction and its subsequent changes of gut microbiota: a case report. Clinical Nutrition Research. 5; 137-140.

48. Han Young Chung, Eun Jung Na, Kyu-Ho Lee, Sangryeol Ryu, Hyunjin Yoon, Ju-Hoon Lee, Hyeun Bum Kim, Heebal Kim, Sang Ho Choi, Bong-Soo Kim*. (2016) Complete genome sequence of Vibrio parahaemolyticus FORC_023 isolated from raw fish storage water. Pathogens and Diseases. 74(4);ftw032.

49. Bumjo Oh, Bong-Soo Kim, Ji Won Kim, Jong Seung Kim, Seong-Joon Koh, Byeong Gwan Kim, Kook Lae Lee, Jongsik Chun. (2016) The effect of probiotics on but microbiota during the Helicobacter pylori eradication: randomized controlled trial. Helicobacter. 21(3); 165-174.

50. SeungHak Yang, Joung Soo Lim, Modabber Ahmed Khan, Bong-Soo Kim, Dong Yoon Choi, Eun Young Lee, HeeKwon Ahn. (2015) High-throughput nucleotide sequence analysis of diverse bacterial communities in leachates of decomposing pig carcasses. Genetics and Molecular Biology. 38(3); 373-380.

51. Kyungsun Han, Shambhunath Bose, Young-Mi Kim, Young-Won Chin, Bong-Soo Kim, Jing-hua Wang, Jung-Ho Lee, Hojun Kim. (2015) Rehmannia glutinosa reduced waist circumferences of Korean obese women possibly through modulation of gut microbiota. Food & Function. 6(8); 2684-2692.

52. Hae Young Oh, Bong-Soo Kim, Sang-Soo Seo, Ji-Sook Kong, Jae-Kwan Lee, Sang-Yoon Park, Kyeong-Man Hong, Hyun-Kyoung Kim, Mi Kyung Kim. (2015) The association of uterine cervical microbiota with an increased risk for cervical intraepithelial neoplasia in Korea. Clinical Microbiology and Infection. 21(7); 674.e1-9.

53. Sang A Lee, Ji Ye Lim, Bong-Soo Kim, Su Jin Cho, Nak Yon Kim, Ok Bin Kim, Yuri Kim. (2015) Comparison of the gut microbiota profile in breast- and formula-fed Korean infants using pyrosequencing. Nutrition Research and Practice. 9(3); 242-248.

54. Kyungsun Han, Shambhunath Bose, Jing-hua Wang, Bong-Soo Kim, Mi Jeong Kim, Eun-Jung Kim, Hojun Kim. (2015) Contrasting effects of fresh and fermented kimchi consumption on gut microbiota composition and gene expression related to metabolic syndrome in obese Korean women. Molecular Nutrition & Food Research. 59(5); 1004-1008.

55. SangJoon Mo, Bong-Soo Kim, Sung-Jo Yun, Jung-Ju Lee, Suk-Hyun Yoon, Chung-Hun Oh. (2015) Genome sequencing of Clostridium butyricum DKU-01, isolated from infant feces. Gut Pathogens. 7; 8.

56. Ohgew Kweon, Seong-Jae Kim, Jochen Blom, Sung-Kwan Kim, Bong-Soo Kim, Dong-Heon Baek, Su Park, John B. Sutherland, Carl E. Cerniglia. (2015) Comparative functional pan-genome analyses to build connections between genomic dynamics and phenotypic evolution in polycyclic aromatic hydrocarbon metabolism in the genus Mycobacterium. BMC Evolutionary Biology. 15; 21.

57. Yoon-Seong Jeon, Sang-Cheol Park, Jeongmin Lim, Jongsik Chun, Bong-Soo Kim*. (2015) Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform. Journal of Microbiology. 53(1); 60-69.

58. Yu-Jin Lee, Bong-Soo Kim, Min-Jeong Kim, Sehee Nam, Sung-Ae Oh, Yun S. Kim, Ilhwan Choi, Jong-Geun Park, Gyu-Cheol Lee. (2014) Molecular characterization of Actinomycetes isolated from terrestrial environment and their synthesis of Geosmin and 2-MIB. Journal of Pure and Applied Microbiology. 8; 103-113.

59. Sunhyun Park, Kyung-Mo Song, Hyo-Jin Kim, Bong-Soo Kim, Young Kyung Rhee, Myung-Ki Lee. (2014) Characterization and use of microbial communities in Doenjang to control the unpleasant ordor of Ginkgo epicarp. Food Science and Biotechnology. 23(6); 1959-1964.

60. Hyo-Jin Kim, Min-Jeong Kim, Timothy Lee Turner, Bong-Soo Kim, Kyung-Mo Song, Sung Hun Yi, Myung-Ki Lee. (2014) Pyrosequencing analysis of microbiota reveals that lactic acid bacteria are dominant in Korean flat fish fermented food, Gajami-sikhae. Bioscience Biotechnology and Biochemistry. 78(9); 1611-1618.

61. Yangsoon Lee, Bong-Soo Kim, Jongsik Chun, Ji Hyun Yong, Yeong Seon Lee, Jung Sik Yoo, Dongeun Yong, Seong Geun Hong, Roshan D'Souza, Kenneth S. Thomson, Kyungwon Lee, Yunsop Chong. (2014) Clonality and resistome analysis of KPC-producing Klebsiella pneumonia strain isolated in Korea using whole genome sequencing. Biomed Research International. 2014; 352862.

62. Mi-Young Song, Bong-Soo Kim, Hojun Kim. (2014) Influence of Panax ginseng on obesity and gut microbiota in obese middle-aged Korean women. Journal of Ginseng Research. 38(2); 106-115.

63. Bong-Soo Kim, Hana Yi, Jongsik Chun, Chang-Jun Cha. (2014) Genome sequence of type strain Staphylococcus aureus subsp. aureus. Gut Pathogens. 6; 6.

64. Bong-Soo Kim, Mi-Young Song, Hojun Kim. (2014) The anti-obesity effect of Ephedra sinica through modulation of gut microbiota in obese Korean women. Journal of Ethnopharmacology. 152(3); 532-539.

65. Yoon-Seong Jeon, Kihyun Lee, Sang-Cheol Park, Bong-Soo Kim, Yong-Joon Cho, Sung-Min Ha, Jongsik Chun. (2014) EzEditor: A versatile sequence alignment editor for both ribosomal RNA and protein coding genes. International Journal of Systematic and Evolutionary Microbiology. 64(2); 689-691.

66. Bong-Soo Kim, Hyo Sang Bae, Chi-Yeon Lim, Mi Jeong Kim, Jae-Gu Seo, Jong Yeol Kim, Jae-Eun Kim, Hojun Kim. (2013) Comparison of gut microbiota between Sasang constitutions. Evidence-Based Complementary and Alternative Medicine. 2013; 171643.

67. In-Soo Kim, Kalu I. Ekpeghere, Shin-Young Ha, Bong-Soo Kim, Bongkeun Song, Jong-Tae Kim, Hong-Gi Kim, Sung-Cheol Koh. (2013) Full-scale biological treatment of tannery wastewater using the novel microbial consortium BM-S-1. Journal of Environmental Science and Health, Part A. 49(3); 355-364.

68. Moonsuk Hur, Injung Lee, Bo-Mi Tak, Hae Jin Lee, Jae Jeong Yu, Se Uk Cheon, Bong-Soo Kim*. (2013) Temporal shifts in cyanobacterial communities at different sites on the Nakdong River in Korea. Water Research. 47(19); 6973-6982.

69. Mincheol kim, Ki-Hyun Lee, Seok-Whan Yoon, Bong-Soo Kim, Jongsik Chun, Hana Yi. (2013) Analytical tools and databases for metagenomics in Next-Generation Sequencing era. Genomics & Informatics. 11(3); 102-113.

70. Bong-Soo Kim*, Yoon-Seong Jeon, Jongsik Chun. (2013) Current status and future promise of the human microbiome. Pediatric Gastroenterology, Hepatology & Nutrition. 16(2); 71-79.

71. In-Soo Kim, Kalu I. Ekpeghere, Shin-Young Ha, Soo-Hyeon Kim, Bong-Soo Kim, Bongkeun Song, Jongsik Chun, Jae-Soo Chang, Hong-Gi Kim, Sung-Cheol Koh. (2013) An eco-friendly treatment of tannery wastewater by bioaugmentation of a novel microbial consortium. Journal of Environmental Science and Health, Part A. 48(13), 1732-1739.

72. Yoon-Seong Jeon, Jongsik Chun, Bong-Soo Kim*. (2013) Identification of household bacterial community and analysis of species shared with human microbiome. Current Microbiology. 67(5); 557-563.

73. Kwang Ho Ahn, Kwang Baik Ko, Baek Woo Sung, June Seok Choi, Bong-Soo Kim, Kwang Soo Kim. (2013) Settling and dewatering characteristics of mixed microorganisms according to changes in the SRT. Desalination and Water Treatment. 51; 6201-6209.

74. Mariya Khodakovskaya, Bong-Soo Kim, Jong Nam Kim, Mohammad Alimohammadi, Enkeleda Dervishi, Thikra Mustafa, Carl E. Cerniglia. (2013) Carbon nanotubes as plant growth regulators: effects on tomato growth, reproductive system and soil microbial community. Small. 9(1); 115-123.

75. Chong-Tai Kim, Bong-Soo Kim, Min-Ji Kim, Bang Heon Park, Sujin Kwon, Hack Young Maeng, Jangyul Kwak, Jongsik Chun, Yong-Jin Cho, Namsoo Kim, Chul-Jin Kim, Jin-Soo Maeng. (2012) Draft genome sequencing of Bacillus sp. M2-6, isolated from the roots of a Korean Ginseng, Panax ginseng C.A. Meyer, after high hydrostatic pressure processing. Journal of Bacteriology. 194(24); 7003-7004.

76. Jong Nam Kim, Bong-Soo Kim, Seong-Jae Kim, Carl E. Cerniglia. (2012) Effects of Crude oil, dispersant, and oil-dispersant mixtures on human fecal microbiota in an in vitro culture system. MBio. 3(5);00376-12.

77. Bong-Soo Kim, Chong-Tai Kim, Bang Heon Park, Sujin Kwon, Yong-Jin Cho, Namsoo Kim, Chul-Jin Kim, Jongsik Chun, Jangyul Kwak, Jin-Soo Maeng. (2012) Draft genome sequencing of Staphylococcus saprophyticus subsp. saprophyticus M1-1, isolated from the gills of a Korean rockfish, Sebastes schlegili Hilgendorf, after high hydrostatic pressure processing. Journal of Bacteriology. 194(16); 4441-4442. 

78. Bong-Soo Kim, Jong Nam Kim, Suk-Hwan Yoon, Jongsik Chun, Carl E. Cerniglia. (2012) Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis. Anaerobe. 18(3); 310-320.

79. Dae-Wi Kim, Thomas M. Heinze, Bong-Soo Kim, Laura K. Schnackenberg, Kellie A. Woodling, John B. Sutherland. (2011) Modification of norfloxacin by a Microbacterium sp. strain isolated from a wastewater treatment plant. Applied and Environmental Microbiology. 77(17); 6100-6108.

80. Bong-Soo Kim, Jong Nam Kim, Carl E. Cerniglia. (2011) In vitro culture conditions for maintaining a complex population of human gastrointestinal tract microbiota. Journal of Biomedicine and Biotechnology. 2011; 838040.

81. Young Woon Lim, Byung Kwon Kim, Changmu Kim, Hack Sung Jung, Bong-Soo Kim, Jae-Hak Lee, Jongsik Chun. (2010) Assessment of soil fungal communities using pyrosequencing. Journal of Microbiology. 48(3); 284-289.

82. Bong-Soo Kim, Ok Sun Kim, Eun Young Moon, Jongsik Chun. (2010) Vitellibacter aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Vitellibacter. International Journal of Systematic and Evolutionary Microbiology. 60(9); 1989-1992.

83. Bong-Soo Kim, Young Woon Lim, Jongsik Chun. (2008) Sphingopyxis marina sp. nov. and Sphingopyxis litoris sp. nov., isolated from seawater. International Journal of Systematic and Evolutionary Microbiology.  58(10); 2415-2419.

84. Bong-Soo Kim, Byung Kwon Kim, Jae-Hak Lee, Myungjin Kim, Young Woon Lim, Jongsik Chun. (2008) Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing. Journal of Microbiology. 46(4); 357-363.

85. Ju-Hyoung Kim, Ki-Youn Kim, Young-Tae Hahm, Bong-Soo Kim, Jongsik Chun, Chang-Jun Cha. (2008) Actibacter sediminis gen. nov., sp. nov., a marine bacterium of family Flavobacteriaceae isolated from tidal flat sediment. International Journal of Systematic and Evolutionary Microbiology. 58; 139-143.

86. Bong-Soo Kim, Huyn-Myung Oh, Hojeong Kang, Jongsik Chun. (2005) Archaeal diversity in tidal flat sediment as revealed by 16S rDNA analysis. Journal of Microbiology. 43(2); 144-151.

87. Bong-Soo Kim, Huyn-Myung Oh, Hojeong Kang, Seok-Soon Park, Jongsik Chun. (2004) Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. Journal of Microbiology and Biotechnology. 14(1); 205-211.