C++ code for simulating the Susceptible-Infected-Susceptible epidemic model using the Gillespie algorithm, Asynchronous, or Synchronous updating schemes as described in our recent paper Fennell et al. "The limitations of discrete-time approaches to continuous-time contagion dynamics", can be downloaded here.
MATLAB code for creating L-cloned networks from a given network as described in our recent paper Faqeeh et al. "Network cloning unfolds the effect of clustering on dynamical processes", (see also arXiv:1408.1294) can be downloaded here.
Octave/MATLAB code for generating modular networks with heterogeneous correlations (the so-called Piikk-networks introduced in Melnik et al., Chaos 24, 023106 (2014) [see also arXiv:1207.1809]) is now available for download from here.