Why can't I download samples from the website ? This seems like a very strange limitation that doesn't have any technical ground, but maybe I'm missing something. It's sad because I was really looking forward to using splice.

I use splice, but try to avoid phrases. I tend to mainly use one-shots, transitions, and chopped vocals (which could be a risk, but no problem so far.). I am even dubious about recorded chord sequences as they tend to be easily recognisable. Although there is no copyright on chord sequences, there is a copyright on the recording. Sometimes I use splice to get inspiration. I will find a phrase and then recreate it with my own sounds by playing it into the keyboard to avoid the recording recognition problem.


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As a library owner, we get offered so many lazy tracks where it is a drum loop, a couple of phrases and a vocal chop, often all from the same sample pack. These are the risky ones imho, they have no composition and are just an arrangement of naked samples ?

Users can continually refine each Stack by adding or taking away samples. As with all Splice services, each sample is an original loop created by a music producer or sound designer who is offering their work via the platform for purchase on a royalty-free agreement.

I have a fresh session open with basically one track from the drum designer plugin in it. When I try to add samples from splice, Logic Pro crashes. It only occurs with certain samples I notice, because some work and are added like normal. This is a relatively new phenomenon, as I have used Splice a lot for a couple years with no issue. The only thing I can think of is the nature of the samples, but Splice doesn't really have any info distinguishing the samples other than just them being a .wav file. I'm set at 44.1 kHz sample rate.

So this may not apply to everyone's problem, but I ended up realizing my Logic Pro was set to run in Rosetta 2. Splice had been working with my Logic Pro Rosetta 2 prior, cause like I said, it's been working fine until the past few months I had this issue. However, I turned that off and I have been able to add samples from Splice no problem. There likely was a recent update with Splice. "As of Desktop release 4.2.9, Splice now has native Apple Silicon support." from Splice's support site.

gives three random integers in [1:20] with replacement. I see there are some threads on github on this issue, but I am not sure what is the recommended way with Julia 0.5 to sample without replacement.

There is also randsubseq in Base. This efficiently samples an array without replacement, but with a given probability (per element) rather than a given number of elements. e.g. randsubseq(1:20, 0.15) produces 3 elements on average.

Gene annotations, such as those in GENCODE, are derived primarily from alignments of spliced cDNA sequences and protein sequences. The impact of RNA-seq data on annotation has been confined to major projects like ENCODE and Illumina Body Map 2.0.

We aligned 21,504 Illumina-sequenced human RNA-seq samples from the Sequence Read Archive (SRA) to the human genome and compared detected exon-exon junctions with junctions in several recent gene annotations. We found 56,861 junctions (18.6%) in at least 1000 samples that were not annotated, and their expression associated with tissue type. Junctions well expressed in individual samples tended to be annotated. Newer samples contributed few novel well-supported junctions, with the vast majority of detected junctions present in samples before 2013. We compiled junction data into a resource called intropolis available at We used this resource to search for a recently validated isoform of the ALK gene and characterized the potential functional implications of unannotated junctions with publicly available TRAP-seq data.

Considering only the variation contained in annotation may suffice if an investigator is interested only in well-expressed transcript isoforms. However, genes that are not generally well expressed and nonetheless present in a small but significant number of samples in the SRA are likelier to be incompletely annotated. The rate at which evidence for novel junctions has been added to the SRA has tapered dramatically, even to the point of an asymptote. Now is perhaps an appropriate time to update incomplete annotations to include splicing present in the now-stable snapshot provided by the SRA.

Gene annotations such as those compiled by RefSeq [1] and GENCODE [2] are derived primarily from alignments of spliced complementary DNA (cDNA) sequences and protein sequences [3, 4]. So far, the impact of RNA sequencing (RNA-seq) data on annotation has been limited to a few projects including ENCODE [5] and Illumina Body Map 2.0 [6].

To measure how much splicing variation present in publicly available RNA-seq datasets is missed by annotation, we aligned 21,504 Illumina-sequenced human RNA-seq samples from the Sequence Read Archive (SRA) to the hg19 genome assembly with Rail-RNA [7] and compared exon-exon junction calls to exon-exon junctions from annotated transcripts. We compared exon-exon junctions rather than full transcripts because junction calls from short RNA-seq reads are considerably more reliable than assembled transcripts [8]. Details of our alignment protocol are reviewed in Methods. All alignment was performed in the cloud using Amazon Web Services (AWS) Elastic MapReduce, costing 72 US cents per sample, as computed in Methods.

We considered only Illumina platforms because of their ubiquity and high base-calling accuracy. Specifically, the samples we aligned were obtained by querying the SRA metadata SQLite database of the R/Bioconductor package SRAdb [9] as of April 2015 for all Illumina-sequenced human RNA-seq samples.

We compiled the junction calls and associated coverage levels for 21,504 SRA RNA-seq samples into a resource called intropolis available at Using this resource, we addressed several questions that are fundamental to our understanding of the transcriptome and informative for analyses by individual investigators.

We next asked whether annotated junctions represent the diversity of junction expression observed in the population at large. We considered an RNA-seq junction to be well supported in our data if it was observed in a large number of samples. We calculated the number of junctions that appeared in at least S samples across a range of cutoffs. For each RNA-seq junction we considered, we also evaluated whether it appeared in annotation. We considered the following levels of evidence: (1) fully annotated junctions; (2) separately annotated junctions (typically exon-skipping events), where both the donor and acceptor sites appear in one or more junctions from annotation, but never for the same junction; (3) alternative donor and acceptor sites, where only either the donor or the acceptor site appears in one or more junctions from annotation; and (4) novel junctions, where neither donor nor acceptor site is found in any annotated junction.

This represents only the bulk coverage of junctions. We can also consider the number of junctions observed, regardless of coverage. In 3389 out of 10,311 samples, we observe that fewer than 80% of junctions appear in annotation (Fig. 2 c). So while the most highly covered junctions are well annotated, there is a large number of junctions that are well covered across multiple samples but may not appear in any given small subset of samples.

To explore this idea further, we investigated the potential for single studies to be the sole contributors of individual unannotated junctions. In this event, the junction may not have been called robustly across experimental protocols. Here, we considered junctions that appeared in at least P projects instead of samples. We again broke this calculation down by the different potential levels of evidence: whether the junction was entirely novel, had an alternative donor or acceptor, an exon skip, or whether it was fully annotated (Fig. 3). The story at the project level mirrors the story at the sample level: 23.4% of junctions found in more than 200 of the 929 projects are not fully annotated. So unannotated junctions recur across independent investigations.

We next explored variation across the 21,504 samples we processed. We wanted to see the combination of technical and biological factors that contribute to variation in unannotated junction expression. In this analysis, we considered only the 56,861 unannotated junctions found in at least 1000 samples of the 21,504, and the subset of 21,057 samples of the 21,504 with at least 100,000 reads each. We performed a principal component analysis (PCA) on the data matrix where rows correspond to the 56,861 unannotated junctions and columns correspond to the 21,057 samples. (See Methods for technical details of the decomposition.)

Displayed is the first principal component (PC1) vs. the second principal component (PC2) for a principal component analysis (PCA) with a coverage data matrix where rows are junctions and columns are samples. (See Methods for technical details.) Each point corresponds to a distinct sample. Gray points are unlabeled samples, red points are blood samples, magenta points are lymphoblastoid cell line samples, and cyan points are brain samples. GEUVADIS (GEU) is a sizable cluster of magenta points. The ABRF and SEQC consortia each sequenced mixtures of universal human reference RNA (UHRR) and human brain reference RNA (HBRR) in four sample ratios UHRR:HBRR that form distinct clusters in the shaded regions: 0:1 (green), 1:3 (blue), 3:1 (brown), and 1:0 (yellow)

Lymphoblastoid cell lines, typically made from HapMap samples, are extensively present in the SRA. Different studies cluster together and are again placed on a radial line going through the singular point; each study used very different sequencing depths and read lengths. Searching the SRA metadata, we could classify a number of samples as brain and blood. Again, these samples fall along radial lines through the singular point. The biggest separation in PC2 is between brain and blood, two tissue types that are well represented in the SRA. e24fc04721

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