JupyterLab is the latest web-based interactive development environment for notebooks, code, and data. Its flexible interface allows users to configure and arrange workflows in data science, scientific computing, computational journalism, and machine learning. A modular design invites extensions to expand and enrich functionality.

Thank you for the reply. Yes, the terminal that I am referring to is from the jupyter dashboard. I would have expected that the terminal and the notebook would be looking in the same place, which, I believe they do.


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If I had to guess I would think that it was an issue between the kernel that the notebook was executing and the version of python that the terminal was using. I do have to specifically invoke python3.6 in the terminal in order for python to find the module. Python2.7 is the default, which does not find the module.

This installation is now a special Jupyter magic command meant to handle installing to exactly running the current notebook. A similar version of this magic command now works with conda too. Use %conda install as the start of a conda install command.

To install a library in Jupyter Online Notebook, you need to use the pip command. Pip is a package manager for Python that allows you to install and manage software packages. To install a library, you need to type the following command into a code cell:

In this example, we have imported the NumPy library and given it an alias np. We then use the np.array function to create a new array and assign it to the variable my_array. We then use the print function to display the contents of the array.

Adding a library to your Jupyter Online Notebook is a simple process that can greatly enhance its functionality. By following the steps outlined in this blog post, you can install and import libraries into your notebook and use their functions in your code. Whether you are working on a data analysis project or a machine learning model, adding libraries can help you save time and write more efficient code. So go ahead and try it out for yourself!

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Fundamentally the problem is usually rooted in the fact that the Jupyter kernels are disconnected from Jupyter's shell; in other words, the installer points to a different Python version than is being used in the notebook.In the simplest contexts this issue does not arise, but when it does, debugging the problem requires knowledge of the intricacies of the operating system, the intricacies of Python package installation, and the intricacies of Jupyter itself.In other words, the Jupyter notebook, like all abstractions, is leaky.

Second, I'll dive into some of the background of exactly what the Jupyter notebook abstraction is doing, how it interacts with the complexities of the operating system, and how you can think about where the "leaks" are, and thus better understand what's happening when things stop working.

For various reasons that I'll outline more fully below, this will not generally work if you want to use these installed packages from the current notebook, though it may work in the simplest cases.

That bit of extra boiler-plate makes certain that you are running the pip version associated with the current Python kernel, so that the installed packages can be used in the current notebook.This is related to the fact that, even setting Jupyter notebooks aside, it's better to install packages using

When you're using the terminal and type a command like python, jupyter, ipython, pip, conda, etc., your operating system contains a well-defined mechanism to find the executable file the name refers to.

(Parenthetical note: why is the first entry of $PATH repeated twice here? Because every time you launch jupyter notebook, Jupyter prepends the location of the jupyter executable to the beginning of the $PATH. In this case, the location was already at the beginning of the path, and the result is that the entry is duplicated. Duplicate entries add clutter, but cause no harm).

A Jupyter kernel is a set of files that point Jupyter to some means of executing code within the notebook.For Python kernels, this will point to a particular Python version, but Jupyter is designed to be much more general than this: Jupyter has dozens of available kernels for languages including Python 2, Python 3, Julia, R, Ruby, Haskell, and even C++ and Fortran!

The root of the issue is this: the shell environment is determined when the Jupyter notebook is launched, while the Python executable is determined by the kernel, and the two do not necessarily match.In other words, there is no guarantee that the python, pip, and conda in your $PATH will be compatible with the python executable used by the notebook.

In my current notebook environment, the two differ.This is why a simple !pip install or !conda install does not work: the commands install packages in the site-packages of the wrong Python installation.

So, in summary, the reason that installation of packages in the Jupyter notebook is fraught with difficulty is fundamentally that Jupyter's shell environment and Python kernel are mismatched, and that means that you have to do more than simply pip install or conda install to make things work.The exception is the special case where you run jupyter notebook from the same Python environment to which your kernel points; in that case the simple installation approach should work.

There is one tricky issue here: this approach will fail if your myenv environment does not have the ipykernel package installed, and probably also requires it to have a jupyter version compatible with that used to launch the notebook. So it's not a full solution to the problem by any means, but if Python kernels could be designed to do this sort of shell initialization by default, it would be far less confusing to users: !pip install and !conda install would simply work.

Even if the above changes to the stack are not possible or desirable, we could simplify the user experience somewhat by introducing %pip and %conda magic functions within the Jupyter notebook that detect the current kernel and make certain packages are installed in the correct location.

If a pip magic and conda magic similar to the above were added to Jupyter's default set of magic commands, I think it could go a long way toward solving the common problems that users have when trying to install Python packages for use with Jupyter notebooks.This approach is not without its own dangers, though: these magics are yet another layer of abstraction that, like all abstractions, will inevitably leak.But if they are implemented carefully, I think it would lead to a much nicer overall user experience.

After proposing some simple solutions that can be used today, I went into a detailed explanation of why these solutions are necessary: it comes down to the fact that in Jupyter, the kernel is disconnected from the shell.The kernel environment can be changed at runtime, while the shell environment is determined when the notebook is launched.The fact that a full explanation took so many words and touched so many concepts, I think, indicates a real usability issue for the Jupyter ecosystem, and so I proposed a few possible avenues that the community might adopt to try to streamline the experience for users.

First let me preface this with the disclaimer that I'm new to R, but a longtime Python power user. Given that I love the conda ecosystem and the Jupyter notebook, I'm trying to set them up as my R development environment as well.

Getting it setup was easy peasy and everything is working great for standard R stuff but my analysis requires some R libraries that are not available in r-essentials channel. No problem, I think I know how to install an R library. I go to "C:\Anaconda\R\bin\x64\Rgui.exe" and install rgdal, dismo, and some other packages. To check my work I looked in C:\Anaconda\R\library and there they are.

But when I run a jupyter notebook from the Anaconda command prompt. And start a new R notebook I get a "Error in library(dismo): there is no package called 'dismo'" Wait a sec, I run a ".libPaths()" from the notebook and it looks like its pointing

You can add .libPaths('path_where_your_packages_are') in a code cell at the beginning of your notebook to tell jupyter where your packages are. For me that was .libPaths('~/R/win-library/3.2') (work-around from discnerd who filed this issue on github).

More details (likely specific to my system/installations): When running .libPaths() in R, I got 2 locations: one for which admin rights were required for writing, and one for which admin rights were not required for writing. While packages installed through R land in the location where admin rights are not required, jupyter looks at the location where admin rights are required.

I am trying to import matplotlib in a Jupyter notebook and the import works fine. However, it uses the wrong version of the library (installed also systemwide) and I don't know how to force it to use the one in the virtualenvironment.

The basic solution was to make things consistent, as was suggested. I did 'conda install jupyter" because I was using another version of jupyter (which jupyter). Then I obtained an error in authorization, so I went with the traceback suggestion of

I am using R-jupyter for coding into R. But I am not being able to install fpp3 by (install.packages('fpp3')) at Jupytar. A very long text appears once I write that command. Also library (tssible) does not work.

The Jupyter Notebook is an interactive computing environment that enables users to author notebook documents that include code, interactive widgets, plots, narrative text, equations, images and even video! The Jupyter name comes from 3 programming languages: Julia, Python, and R. It is a popular tool for literate programming. Donald Knuth first defined literate programming as a script, notebook, or computational document that contains an explanation of the program logic in a natural language (e.g. English or Mandarin), interspersed with snippets of macros and source code, which can be compiled and rerun. You can think of it as an executable paper! e24fc04721

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