Barroso M, Monaghan MG, Niesner R, Dmitriev RI: Probing organoid metabolism using fluorescence lifetime imaging microscopy (FLIM): The next frontier of drug discovery and disease understanding. Advanced Drug Delivery Reviews 2023, 201:115081.
Debruyne AC, Okkelman IA, Dmitriev RI: Balance between the cell viability and death in 3D. Seminars in Cell & Developmental Biology 2023, 144:55-66.
Dmitriev RI, Intes X, Barroso MM: Luminescence lifetime imaging of three-dimensional biological objects. Journal of Cell Science 2021, 134(9):1-17.
Papkovsky DB, Dmitriev RI: Imaging of oxygen and hypoxia in cell and tissue samples. Cell Mol Life Sci 2018, 75(16):2963-2980.
Aigner D, Dmitriev RI, Borisov SM, Papkovsky DB, Klimant I: pH-sensitive perylene bisimide probes for live cell fluorescence lifetime imaging. Journal of Materials Chemistry B 2014, 2(39):6792-6801.
O'Donnell N, Okkelman IA, Timashev P, Gromovykh TI, Papkovsky DB, Dmitriev RI: Cellulose-based scaffolds for fluorescence lifetime imaging-assisted tissue engineering. Acta Biomaterialia 2018, 80:85-96.
Dalfen I, Dmitriev RI, Holst G, Klimant I, Borisov SM: Background-Free Fluorescence-Decay-Time Sensing and Imaging of pH with Highly Photostable Diazaoxotriangulenium Dyes. Analytical Chemistry 2019, 91(1):808-816.
Jenkins J, Borisov SM, Papkovsky DB, Dmitriev RI: Sulforhodamine nanothermometer for multi-parametric Fluorescence Lifetime Imaging Microscopy. Analytical Chemistry 2016, 88(21):10566-10572.
Russegger A, Debruyne AC, Berrio DC, Fuchs S, Marzi J, Schenke-Layland K, Dmitriev RI, Borisov SM: Bright and Photostable TADF-Emitting Zirconium(IV) Pyridinedipyrrolide Complexes: Efficient Dyes for Decay Time-Based Temperature Sensing and Imaging. Advanced Optical Materials 2023, n/a(n/a):2202720.
Okkelman IA, Dmitriev RI, Foley T, Papkovsky DB: Use of Fluorescence Lifetime Imaging Microscopy (FLIM) as a Timer of Cell Cycle S Phase. PLOS ONE 2016, 11(12):e0167385.
Okkelman IA, McGarrigle R, O’Carroll S, Berrio DC, Schenke-Layland K, Hynes J, Dmitriev RI: Extracellular Ca2+-Sensing Fluorescent Protein Biosensor Based on a Collagen-Binding Domain. ACS Applied Bio Materials 2020, 3(8):5310-5321.
Okkelman IA, Papkovsky DB, Dmitriev RI: Estimation of the Mitochondrial Membrane Potential Using Fluorescence Lifetime Imaging Microscopy. Cytometry Part A 2019, 0(0).
Okkelman IA, Zhou H, Borisov SM, Debruyne AC, Lefebvre AEYT, Leomil Zoccoler M, Chen L, Devriendt B, Dmitriev RI: Visualizing the internalization and biological impact of nanoplastics in live intestinal organoids by Fluorescence Lifetime Imaging Microscopy (FLIM). Light: Science & Applications 2025, 14(1):272.
Okkelman IA, Foley T, Papkovsky DB, Dmitriev RI: Multi-Parametric Imaging of Hypoxia and Cell Cycle in Intestinal Organoid Culture. In: Multi-Parametric Live Cell Microscopy of 3D Tissue Models. Springer; 2017: 85-103.
Okkelman IA, Puschhof J, Papkovsky DB, Dmitriev RI: Visualization of Stem Cell Niche by Fluorescence Lifetime Imaging Microscopy. In: Intestinal Stem Cells: Methods and Protocols. Edited by Ordóñez-Morán P. New York, NY: Springer US; 2020: 65-97.
Okkelman IA, Dmitriev RI: Fluorescence Intensity and Fluorescence Lifetime Imaging Microscopies (FLIM) of Cell Differentiation in the Small Intestinal Organoids Using Cholera Toxin. In: Intestinal Differentiated Cells: Methods and Protocols. Edited by Ordóñez-Morán P. New York, NY: Springer US; 2023: 171-195.
Debruyne AC, Ferrari G, Zhou H, Van Loon N, Heymans N, Okkelman IA, Dmitriev RI: Production and Multi-Parameter Live Cell Fluorescence Lifetime Imaging Microscopy (FLIM) of Multicellular Spheroids. JoVE 2024(210):e66845.
Dmitriev RI, Zhdanov AV, Nolan YM, Papkovsky DB: Imaging of neurosphere oxygenation with phosphorescent probes. Biomaterials 2013, 34(37):9307-9317.
Dmitriev RI, Kondrashina AV, Koren K, Klimant I, Zhdanov AV, Pakan JMP, McDermott KW, Papkovsky DB: Small molecule phosphorescent probes for O2 imaging in 3D tissue models. Biomaterials Science 2014, 2(6):853-866.
Dmitriev R, Borisov S, Kondrashina A, Pakan JP, Anilkumar U, Prehn JM, Zhdanov A, McDermott K, Klimant I, Papkovsky D: Imaging oxygen in neural cell and tissue models by means of anionic cell-permeable phosphorescent nanoparticles. Cell Mol Life Sci 2015, 72(2):367-381.
Dmitriev RI, Borisov SM, Düssmann H, Sun S, Müller BJ, Prehn J, Baklaushev VP, Klimant I, Papkovsky DB: Versatile Conjugated Polymer Nanoparticles for High-Resolution O2 Imaging in Cells and 3D Tissue Models. ACS Nano 2015, 9(5):5275-5288.
Dmitriev RI, Borisov SM, Jenkins J, Papkovsky DB: Multi-parametric imaging of tumor spheroids with ultra-bright and tunable nanoparticle O2 probes. In: Photonics West 2015: 2015. 932806-932806-932808.
Jenkins J, Dmitriev RI, Morten K, McDermott KW, Papkovsky DB: Oxygen-sensing scaffolds for 3-dimensional cell and tissue culture. Acta Biomaterialia 2015, 16(0):126-135.
Dmitriev RI, O’Donnell N, Papkovsky DB: Metallochelate Coupling of Phosphorescent Pt-Porphyrins to Peptides, Proteins, and Self-Assembling Protein Nanoparticles. Bioconjugate Chemistry 2016, 27(2):439-445.
Jenkins J, Papkovsky DB, Dmitriev RI: The Ca2+/Mn2+ -transporting SPCA2 pump is regulated by oxygen and cell density in colon cancer cells. Biochemical Journal 2016, 473(16):2507-2518.
Okkelman IA, Foley T, Papkovsky DB, Dmitriev RI: Live cell imaging of mouse intestinal organoids reveals heterogeneity in their oxygenation. Biomaterials 2017, 146:86-96.
Yazgan G, Dmitriev RI, Tyagi V, Jenkins J, Rotaru G-M, Rottmar M, Rossi RM, Toncelli C, Papkovsky DB, Maniura-Weber K et al: Steering surface topographies of electrospun fibers: understanding the mechanisms. Scientific Reports 2017, 7(1):158.
Okkelman IA, Neto N, Papkovsky DB, Monaghan MG, Dmitriev RI: A deeper understanding of intestinal organoid metabolism revealed by combining fluorescence lifetime imaging microscopy (FLIM) and extracellular flux analyses. Redox Biology 2020, 30:101420.