Software
Photo credit: Andy Prokh
While my research interests vary, they can be summarized by the idea that laboratory automation for generation of large-scale datasets coupled with machine learning and mathematical modeling is key to understanding complex biological phenomena. Below are links to a few publicly available softwares I have contributed to. While I have been hard at work at Encodia, I cannot publicly share that software... yet!
A collaboration between the Human Protein Atlas (proteinatlas.org), CCP Games (EVE Online), MMOS (mmos.ch). The first citizen science project to be directly integrated in to an existing massive multiplayer online video game. (2016-Present).
The Localization Cellular Annotation Tool (Loc-CAT) predicts the subcellular localization of proteins base on fluorescent microscopy images. (2016-Present).
Matlab-based SLF feature extraction for the Human Protein Atlas. (2015-Present).
Image derived generative models for subcellular spatial organization. (2010-2015).
MCell based tool for simulation and visualization of agent-based biochemical networks. (2012-2015).