DeepCor is an fMRI denoising tool. It works on task and resting-state fMRI data and is based on Contrastive Variational Autoencoders (CVAEs).
DeepCor is available for python and can be run locally (requires a GPU & PyTorch), on a compute cluster or using Google Colaboratory. We're working on a toolbox, in the meantime you can find and try the research code below.
Code for the latest DeepCor model (v2) will be available here: github.com/Aglinskas/deepcor-fmri-toolbox
You can run it on google colab here
DeepCor (v1) Code is available here: github.com/sccnlab/DeepCor
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Nov 28th, 2025. Click here to read it.