Downregulation of a cell polarity protein potentiates Chikungunya Virus infection in host cells.

Kumar R., Tatiya P., Dey D., Ratra Y., Mian SY., Chaudhary S, Suhag K, Basak S, Banerjee M. (2023). BioRxiv, doi: https://doi.org/10.1101/2023.07.24.550336

A single C-terminal residue controls SARS-CoV-2 spike trafficking and virion assembly.

Dey D., Qing E., He Y., Chen Y., Jennings B., Cohn W., Singh S., Gakhar L., Schnicker NJ., Pierce BG., Whitelegge JP., Doray B, Orban JP., Gallagher T., Hasan SS. (2023). BioRxiv, doi: https://doi.org/10.1101/2023.03.09.531992

An extended motif in the SARS-CoV-2 spike modulates binding and release of host coatomer in retrograde trafficking.

Dey, D*., Singh, S*., Khan, S., Martin, M., Schnicker, N. J., Gakhar, L., Pierce, B. G., & Hasan, S. S. (2022). Communications biology, 5(1), 115. https://doi.org/10.1038/s42003-022-03063-y (*Equal contribution)

Computational Insight Into the Mechanism of SARS-CoV-2 Membrane Fusion.

Borkotoky, S.*, Dey, D.*, & Banerjee, M. (2021). Journal of chemical information and modeling, 61(1), 423–431. https://doi.org/10.1021/acs.jcim.0c01231 (*Equal contribution) 

The effect of amantadine on an ion channel protein from Chikungunya virus.

Dey, D., Siddiqui, S. I., Mamidi, P., Ghosh, S., Kumar, C. S., Chattopadhyay, S., Ghosh, S., & Banerjee, M. (2019). PLoS neglected tropical diseases, 13(7), e0007548. https://doi.org/10.1371/journal.pntd.0007548

Hydrophobicity and oligomerization are essential parameters for membrane penetration activity of the VP4 peptide from Hepatitis A Virus (HAV).

Nair, P., Dey, D., Borkotoky, S., Shukla, A., & Banerjee, M. (2019). Archives of biochemistry and biophysics, 678, 108188. https://doi.org/10.1016/j.abb.2019.108188

Non-Enveloped Virus Entry: Structural Determinants and Mechanism of Functioning of a Viral Lytic Peptide.

Bajaj, S., Dey, D., Bhukar, R., Kumar, M., & Banerjee, M. (2016). Journal of molecular biology, 428(17), 3540–3556. https://doi.org/10.1016/j.jmb.2016.06.006

The C-terminal region of the non-structural protein 2B from Hepatitis A Virus demonstrates lipid-specific viroporin-like activity.

Shukla, A., Dey, D., Banerjee, K., Nain, A., & Banerjee, M. (2015). Scientific reports, 5, 15884. https://doi.org/10.1038/srep15884

Structural investigations of the palmitoylated F13 envelope protein of Mpox virus.

Borkotoky S.*, Dey, D*. Journal of Medical Virology. 2023;95(5):e28798. doi:10.1002/jmv.28798 (*Equal contribution)

In silico identification of Tretinoin as a SARS-CoV-2 envelope (E) protein ion channel inhibitor.

Dey, D., Borkotoky, S., & Banerjee, M. (2020). Computers in biology and medicine, 127, 104063. https://doi.org/10.1016/j.compbiomed.2020.104063

Immunoinformatics-based design and production of a multi-epitope vaccine against the Scotophilus Bat Coronavirus 512

Dey, D.* and Borkotoky, S. (*Corresponding author, Under review)

Rapid production strategies for structure determination of the coatomer WD40 domains.

Dey, D* & Hasan, S. S. (2023). (Under review)

Interactions of angiotensin-converting enzyme-2 (ACE2) and SARS-CoV-2 spike receptor-binding domain (RBD): a structural perspective. 

Borkotoky, S., Dey, D., Hazarika, Z. (2022). Molecular Biology Reports,  10.1007/s11033-022-08193-4. https://doi.org/10.1007/s11033-022-08193-4

Unravelling viral dynamics through molecular dynamics simulations - A brief overview

Borkotoky, S., Dey, D., Hazarika, Z., Joshi, A., Tripathi, K. (2022). Biophysical Chemistry, 291:106908. https://doi.org/10.1016/j.bpc.2022.106908

The Structural Biology of Eastern Equine Encephalitis Virus, an Emerging Viral Threat.

Hasan, S. S., Dey, D., Singh, S., & Martin, M. (2021). Pathogens (Basel, Switzerland), 10(8), 973. https://doi.org/10.3390/pathogens10080973

Structural and biochemical insights into flavivirus proteins.

Dey, D*., Poudyal, S*., Rehman, A., & Hasan, S. S. (2021). Virus research, 296, 198343. https://doi.org/10.1016/j.virusres.2021.198343 (*Equal contribution)

Breach: Host Membrane Penetration and Entry by Nonenveloped Viruses.

Kumar, C. S., Dey, D., Ghosh, S., & Banerjee, M. (2018). Trends in microbiology, 26(6), 525–537. https://doi.org/10.1016/j.tim.2017.09.010

Inhibitor-Based Therapeutics for Treatment of Viral Hepatitis.

Dey, D., & Banerjee, M. (2016). Journal of clinical and translational hepatology, 4(3), 248–257. https://doi.org/10.14218/JCTH.2016.00025

Structural Alterations in Non-enveloped Viruses during Disassembly.

Azad, K*., Dey, D.*, Banerjee, M. Physical Virology, Springer Cham. Springer Series in Biophysics, vol 24. https://doi.org/10.1007/978-3-031-36815-8_9. (*Equal contribution)

Bioinformatics in development of antivirals.

Borkotoky S., Dey, D.* (2022). Biotechnological Interventions Augmenting Livestock Health and Production, Springer, Singapore. https://doi.org/10.1007/978-981-99-2209-3_17 (*Corresponding author)

Livestock Viral Diseases and insights with systems biology.

Dey D., Hazarika Z., Pandey, A.K., Borkotoky S. Volume 5 (2022). Systems Biology and Bioinformatics In Animal Sciences, (Accepted)

An introduction to principles of virus structure. 

Hasan, S.S., Dey, D., Rehman, A. Volume 5 (2021). Molecular Medical Microbiology, 3rd Edition (ISBN: 9780128186190), Elsevier (Accepted)

Developments in computer-aided drug design for antiviral research.

Dey, D.* (2022). Advances in Antiviral Research, Springer Nature. *Corresponding author (Under Review)