Extended abstracts

--- 2025 ---

1. Jungyoun Janice Min, Jiong Chen, Jingxuan Bao, Shu Yang, Yize Zhao, Li Shen, Duy Duong-Tran. "Attention-Based Integration of Brain Structure and Function for Trait Anxiety Prediction: Preliminary Results." accepted in the 2025  8th Annual Conference on Cognitive Computational Neuroscience #2025CCN.

2. Boning Tong, Trang Cao, Duy Duong-Tran, Andrew Saykin, Alex Fornito, Li Shen. "Mode-based Decomposition of Multimodality Reveals Relationships across Spatial Scales in Alzheimer’s Disease." accepted in the  Organization of Human Brain Mapping (OHBM) - Main Conference, Brisbane, Australia, 2025.

3. Nghi Nguyen, Jingxuan Bao, Jiong Chen, Trang Cao, Bojian Hou, Shu Yang, Tianlong Chen, Yize Zhao, Christos Davatzikos, Li Shen**, Duy Duong-Tran** "Mapping fMRI-BOLD nonlinear dynamics to transcriptional gradients via Koopman operator similarity analysis." accepted in the  Organization of Human Brain Mapping (OHBM) - Main Conference, Brisbane, Australia, 2025. ( **: Co-supervising author)

--- 2024 ---

4. Mary Regina Boland, Duy Duong-Tran, Li Shen, Allison Willis. "Inferring Pharmacogenetic Risk among Alzheimer's Disease and Related Dementia Patients from Electronic Health Records" accepted American Medical Informatics Association Informatics Summit (AMIA-IS), Pittsburgh, PA.

5. Boning Tong*, Trang Cao*$, Duy Duong-Tran, Andrew Saykin, Alex Fornito**,  Li Shen**. "Mode-base morphometric decomposition of multimodal imaging reveals tight relationships across spatial scales in Alzheimer’s disease" accepted, and presented in 2024 Organization of Human Brain Mapping (OHBM) - Australia Chapter Annual Meeting: Math in the Brain, Australia. (*: Co-first-authors; **: Co-supervising author; $: Corresponding author)

6. Sumita Garai, Mintao Liu, Fredericks Xu, Joaquín Goñi, Duy Duong-Tran, Yize Zhao, Li Shen "Effect of brain network scale on Persistence Cycles: An ADNI comparative study." Extended Abstract published in Alzheimer's Association International Conference (AAIC) 2024 Conference. [Publication Link]

7. Bach Nguyen, Yang S., Bojian H., Chen T., Shen, L., Duong-Tran, D.**, "On enhancing connectomics-based neuromorphic computing performance: Exploring Functional-Connectomics-Inspired Echo State Networks." Extended Abstract published in Proceedings of Machine Learning Summer School Okinawa, 2024. [Publication Link] 

8. Nguyen, N., Hou, T., Shen, L., Duong-Tran, D**.  "Theta-alpha aperiodic dynamics covary with persistence homological scaffolds of hemodynamic networks." Extended Abstract published in the Organization of Human Brain Mapping (OHBM) Conference, Seoul, South Korea, 2024. [Publication Link] 

9. Mintao Liu, Kausar Abbas, Joaquin Goni, Michael Wang, Duy Duong-Tran, Uttara Tipnis, Enrico Amico, Alan Kaplan, Mario Dzemidzic, David Kareken, Beau Ances and Jaroslaw Harezlak. , Joaquin Goni. "Tangent functional connectomes uncover more unique phenotypic traits." published  in 2024 Purdue Collaborative Summit

--- <=2023 ---

10. Duong-Tran, D., Ralph Kaufmann (Purdue), Xuan Wang (George Mason), Enrico Amico (EPFL), Alan Kaplan (LLNL), Giovanni Petri (Centai Italy), Yize Zhao (Yale), Joaquin Goni (Purdue), Moo Chung (UW-Madison) and Li Shen (UPenn). "On topological landscape of human brain functional networks". Extended Abstract published in the Organization of Human Brain Mapping (OHBM) Conference, Montreal, Canada, 2023.

11. Nghi Nguyen (Fulbright University) and Li Shen (UPenn), Duong-Tran, D. "Thalamo-cortical Mass Model unveils Aging-Like Slow Wave-Spindle Dynamics." Extended Abstract published in the Organization of Human Brain Mapping (OHBM) Conference, Montreal, Canada, 2023.

12. Muhammad Umair (George Mason), Li Shen(UPenn), Duong-Tran, D., Xuan Wang(George Mason). "Subject and Task Fingerprint using Dynamics Reconstruction from fMRI Time-series Data." Extended Abstract published in the Organization of Human Brain Mapping (OHBM) Conference, Montreal, Canada, 2023.

13. Garai, S., Duong-Tran, D., Xu, F., Zhao, Y., and Shen, L. "Vertex Importance for forming co-cycles and its correlation with cognitive performance."  Extended Abstract publishedin the Organization of Human Brain Mapping (OHBM) Conference, Montreal, Canada, 2023.

14. Kausar Abbas, Michael Wang, Duy Duong-Tran, Mintao Liu, Uttara Tipnis, Li Shen, Alan Kaplan, Jaroslaw Harezlak, Joaquin Goni. "Tangent space projections of optimally regularized Functional Connectomes improve their phenotypic reliability as measured by their fingerprint". published in JOURNAL OF COMPUTATIONAL NEUROSCIENCE 49 (SUPPL 1), S76-S77.

15. Abbas, K., Wang, M., Duong-Tran, D., Liu, M., Tipnis, U., Shen, L., Kaplan, A., Harezlak, J., and Goni, J. Tangent space projections of Functional Connectomes improve their phenotypic reliability as measured by their fingerprint gradient, Accepted to Poster Session - 2021 NetSci Conference - Network Neuroscience Satellite, hosted virtually by Indiana University.

16. Duong-Tran, D., Abbas, K., Cadena-Pico, J., Kaplan, A., Go ˜ni, J. A principled framework for estimating whole-brain functional connectivity based on functional networks, Accepted to Poster Session 2021 NetSci Conference - Network Neuroscience Satellite

17. Duong-Tran, D., Amico, E., Corominas-Murtra, Abbas, K., Dzemidzic, M., Kareken, D., B., Ventresca, M. and Goni, J., A morphospace framework to quantify configural breadth based on brain functional networks, Accepted in 2020 Clinical and Translational Sciences Institute (CTSI)

18. Abbas, K., Amico, E., Svaldi, D., Tipnis, U., Duong-Tran, D., Harezlak, J., and Goni, J., Multidimensional framework based on functional connectivity traits for task independent individual fingerprinting, Accepted to Poster Session - 2019 Netsci Conference, Vermont

19. Amico, E., Abbas, K., Duong-Tran, D., Tipnis, U., Rajapandian, M., Ventresca, M., Harezlak, J., and Goni, J., Towards a mathematical theory of communication in human brain networks, Accepted to Poster Session Netsci Conference, Vermont, U.S.A., 2019

20. Duong-Tran, D., Amico, E., Corominas-Murtra, B., Dzemidzic, M., Kareken, D., Ventresca, M., Goni, J., A morphospace framework to quantify flexibility of functional networks, Accepted to Poster Session - NetSci Conference, Vermont, U.S.A., 2019

21. Abbas, K., Amico, E., Svaldi, D., Tipnis, U., Duong-Tran, D., Harezlak, J., Goni, J., Task Identification based on Functional Connectomes, Accepted in Organization of Human Brain Mapping, Rome, Italy, 2019

22. Duong-Tran, D., Amico, E., Corominas-Murtra, B., Ventresca, M., Goni, J., A morphospace framework to quantify functional flexibility, accepted in Mediterranean School of Complex Network Summer School, Silina, Italy, 2018

23. Amico, E., Duong-Tran, D., Uttara, T., Rajapandian, M., Ventresca, M., Jaroslav, H., Goni, J., Towards a mathematical theory of communication in human connectome, accepted to NetSci Conference, Paris, France, 2018