Publications

Journal Papers

2023

• S. S. Somathilaka, S. Balasubramaniam, D. P. Martins, X. Li, "Revealing gene regulation-based neural network computing in bacteria" Biophysical Reports, vol. 3, no. 3, Sep. 2023. [CELL] (Open Access)

• M. Egan, M. Kuscu, M. Taynnan Barros, M. Booth, A. Llopis-Lorente, M. Magarini, D. P. Martins, M. Schäfer, P. Stano, "Toward interdisciplinary synergies in molecular communications: Perspectives from synthetic biology, nanotechnology, communications engineering and philosophy of science", MDPI Life, vol. 13, no.1,  p. 208, Jan. 2023. [MDPI] (Open Access)

2022

• H. Šiljak, M. T. Barros, N. D'Arcy, D. P. Martins, N. Marchetti, and S. Balasubramaniam. "Applying Intelligent Reflector Surfaces for Detecting Violent Expiratory Aerosol Cloud using Terahertz Signals." IEEE Networks, early access. [IEEE][Author version]

• D. P. Martins, M. T. Barros, B. O’Sullivan, I. Seymoure, A. O’Riordan, L. Coffey, J. B. Sweeney, and S. Balasubramaniam. “Microfluidic-based Bacterial Molecular Computing on a Chip”. IEEE Sensors Journal, vol. 22, no. 17, pp. 16772-16784, Jul. 2022. [IEEE][Author version]

• S. Somathilaka, D. P. Martins, W. Barton, O. O’Sullivan, P. D. Cotter and S. Balasubramaniam, “A Graph-based Molecular Communications Model Analysis of the Human Gut Bacteriome”. IEEE Journal of Biomedical and Health Informatics, vol. 26, no. 7, pp. 3567-3577, Jul. 2022. [IEEE][Author version]

2021

• S. L. Bernal, D. P. Martins, A. H. Celdrán, “Towards the mitigation of distributed denial-of-service cyberbioattacks in bacteria-based biosensing systems”, Digital Signal Processing, vol. 118, p. 103241, Nov. 2021. [Elsevier DSP][Author version]

• H. Siljak, N. Ashraf, M. T. Barros, D. P. Martins, B. Butler, A. Farhang, N. Marchetti, S. Balasubramaniam. “Evolving Intelligent Reflector Surface Toward 6G for Public Health: Application in Airborne Virus Detection”. IEEE Network, vol. 35, no. 5, Sep./Oct. 2021. [IEEE][Author version]

2019

• D. P. Martins, M. T. Barros, and S. Balasubramaniam, " Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits", IEEE Transactions on NanoBioscience, vol. 18, no. 4, pp. 628-639, Oct. 2019. [IEEE][Author version]

2018

• D. P. Martins, K. Leetanasaksakul, M. T. Barros, A. Thamchaipenet, W. Donnely, and S. Balasubramaniam, "Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppresion", IEEE Transactions on NanoBioscience, vol. 17, no. 4, pp. 533-542, Oct. 2018. [IEEE][Author version]

• D. P. Martins, M. T. Barros, M. Pierobon, M. Kandhavelu, P. Lio', and S. Balasubramaniam, "Computational Models for Trapping Ebola Virus Using Engineered Bacteria", IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, no. 6, pp. 2017-2027, Nov. 2018. [IEEE][Author version]

  2017

• M. T. Barros, D. P. Martins, and M. S. Alencar, "Comunicações Moleculares: Um Novo Paradigma de Comunicações para Aplicações em Nanomedicina" (in Portuguese), Revista de Tecnologia da Informação e Comunicação, vol. 7, no. 1, pp. 31-38, Mar. 2017. [Link]

2014

• D. P. Martins, and M. S. Alencar, "Análise e Caracterização Matemática do Ruído Gerado por Ventiladores Industriais" (in Portuguese), Revista de Tecnologia da Informação e Comunicação, vol. 4, no. 1, pp. 42-46, Jul. 2014. [Link]

Conference Papers

2022

• S. Somathilaka, D. P. Martins and S. Balasubramaniam, “Information Flow of Cascading Bacterial Molecular Communication Systems with Cooperative Amplification”. IEEE International Conference on Communications 2022. [IEEE][Author version]

2021

• D. P. Martins, J. Drohan, S. Foley, L. Coffey, and S. Balasubramaniam. "Modulated Molecular Channel Coding Scheme for Multi-Bacterial Transmitters." In Proceedings of the 19th ACM Conference on Embedded Networked Sensor Systems, pp. 610-615. 2021. [ACM][Author version]

• D. P. Martins, P. D. Cotter, O. O’Sullivan, S. Balasubramaniam, “Binding Process Analysis of Bacterial-based AND Logic Gates”, In Proceedings of the 8th ACM Conference on Nanoscale Computing and Communication (ACM NanoCom 2021), pp. 1-2. 2021. [ACM][Author version]

2020

• D. P. Martins, H. Q. O'Reilly, L. Coffey, P. D. Cotter, and S. Balasubramaniam. "Hydrogel-Based Bio-Nanomachine Transmitters for Bacterial Molecular Communications", pages 14–19. In Proceedings of the 1st ACM International Workshop on Nanoscale Computing, Communication, and Applications (NanoCoCoA 2020), Nov. 2020. [ACM][Author version]

• S. B. López, D. P. Martins, and A. C. Huertas. "Distributed Denial of Service Cyberbioattack Affecting Bacteria-based Biosensing Systems". In 17th International Conference on Electrical Engineering/Electronics, Computer, Telecommunications and Information Technology (ECTI-CON 2020) , June 2020. [IEEE][Author version]

2016

• D. P. Martins, M. T. Barros, and S. Balasubramaniam, "Using Competing Bacterial Communication to Disassemble Biofilms", In Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication (NANOCOM 2016), Sep. 2016. [ACM][Author version]

2014

• D. P. Martins, and M. S. Alencar, "Modelagem Matemática de um Ruído Produzido por Ventiladores Industriais" (in Portuguese), In Congresso Nacional de Engenharia Mecânica - CONEM, 2014. [Link]

• D. P. Martins, and M. S. Alencar "A New Approach to Noise Measurement in an Industrial Facility", In Proceedings of the 2014 IEEE International Instrumentation and Measurement Technology Conference - I2MTC, p. 964. [IEEE] [Author version]

2013

• D. P. Martins, and M. S. Alencar, "Análise de Ruído Sonoro em Ambiente Industrial: Uma Nova Abordagem" (in Portuguese), In Encontro Anual do Iecom em Comunicações, Redes e Criptografia, 2013. [Link]

2007

• A. Sampaio, D. P. Martins, P. I. G. Araújo, C.A. S. M Júnior,  "Utilizando a Robótica como Meio Educacional: Construção e Análise de Desempenho de um Robô Móvel" (in Portuguese), In Encontro Interdisciplinar de Culturas, Tecnologias e Educação - Interculte, 2007. 

Competition

• Y. Almardeny, C. Fonseca, D. Vimalajeewa and D. P. Martins "Deep Learning-based Voting System Model for Blind Bit Detection in Bacteria-based Molecular Communications Systems", Data Competition - ACM NanoCom 2021. [Link]

Tutorial

• D. P. Martins, and P. E. B. B. Mesquita, "Enlace Ótico Espacial I: Estudo sobre o uso da Tecnologia em Ambientes Domésticos para Acesso Banda Larga" (in Portuguese), Tutorial Teleco. [Link]

• D. P. Martins, and P. E. B. B. Mesquita, "Enlace Ótico Espacial II: Estudo sobre o uso da Tecnologia em Ambientes Domésticos para Acesso Banda Larga" (in Portuguese), Tutorial Teleco. [Link]

Thesis and Dissertations 

• D. P. Martins, "Computational Synthetic Biology for Molecular Communications", PhD thesis, Waterford Institute of Technology, 2019. [Link]

• D. P. Martins, "Caracterização Matemática do Ruído Acústico em Ambiente Fabril" (in Portuguese), MSc dissertation, Universidade Federal de Campina Grande, Brazil 2013. [Link] 

• D. P. Martins, "Laboratório de Engenharia - Um Ambiente de Aprendizagem Complexa"  (in Portuguese), Postgraduate Diploma dissertation, UNIJORGE, Brazil 2011.

• D. P. Martins, "Link Ótico Espacial em Ambientes Dométicos para Acesso Banda Larga" (in Portuguese), BSc dissertation, UNIJORGE, Brazil 2008. [Link]