"Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids", by Durbin et al., Cambridge University Press.
"Understanding Bioinformatics", by M. Zvelebil and J.O. Baum. Published by Garland Science, 2008.
"Bioinformatics algorithms: an active learning approach", by Phillip Compeau and Pavel Pevzner. Published by Active Learning Pub.
"Inferring Phylogenies", by Joseph Felsenstein.
"Genome-Scale Algorithm Design", by V. Makinen, D. Belazzougui, F. Cunial and A. Tomescu, Cambridge University Press, 2015.
The above books are recommended but not required. In addition, a number of research papers will be discussed.
The Latex Template for preparing the scribe notes can be downloaded here.