Winter 2021 CS234 Project
comparing different approaches for creating suffix array using these links:
Reading papers on memory usage optimization for suffix arrays
Changed project from Baum-Welch. Implement the Baum-Welch algorithm for HMM described in class. Test the training of the HMM on a biological relevant dataset (e.g. TF binding sites), and test in on a chrosomome. Collect experimental time measurements. to suffix arrays implementation
mayaz003@ucr.edu to get more information on the project