Embedded Files
Gene Expression Omnibus (NCBI GEO)
Gene Expression Omnibus (NCBI GEO)
"GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles."
"GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles."
ArrayExpress (EBI)
ArrayExpress (EBI)
"The functional genomics data collection (ArrayExpress), stores data from high-throughput functional genomics experiments, and provides data for reuse to the research community. In line with community guidelines, a study typically contains metadata such as detailed sample annotations, protocols, processed data and raw data"
"The functional genomics data collection (ArrayExpress), stores data from high-throughput functional genomics experiments, and provides data for reuse to the research community. In line with community guidelines, a study typically contains metadata such as detailed sample annotations, protocols, processed data and raw data"
Sequence Read Archive (SRA)
Sequence Read Archive (SRA)
"Sequence Read Archive (SRA) data, available through multiple cloud providers and NCBI servers, is the largest publicly available repository of high throughput sequencing data. The archive accepts data from all branches of life as well as metagenomic and environmental surveys. "
"Sequence Read Archive (SRA) data, available through multiple cloud providers and NCBI servers, is the largest publicly available repository of high throughput sequencing data. The archive accepts data from all branches of life as well as metagenomic and environmental surveys. "
BioGPS
BioGPS
"A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function."
"A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function."
CZ CellxGene Discover
CZ CellxGene Discover
"CELLxGENE is a suite of tools that help scientists to find, download, explore, analyze, annotate, and publish single cell datasets. It includes several powerful tools with various features to help you to engage with single cell data."
"CELLxGENE is a suite of tools that help scientists to find, download, explore, analyze, annotate, and publish single cell datasets. It includes several powerful tools with various features to help you to engage with single cell data."
Single Cell Expression Atlas
Single Cell Expression Atlas
"Single Cell Expression Atlas is unique in that it provides to the life sciences community uniformly analysed and annotated single cell RNA-Seq data across multiple species. It enables easy access to meaningful results and standardised data files (see Figure 1), therefore providing easy input to software for further analysis gene of expression matrices, as well as supporting the development of computational methods for downstream analyses, such as cell type annotation." Link
"Single Cell Expression Atlas is unique in that it provides to the life sciences community uniformly analysed and annotated single cell RNA-Seq data across multiple species. It enables easy access to meaningful results and standardised data files (see Figure 1), therefore providing easy input to software for further analysis gene of expression matrices, as well as supporting the development of computational methods for downstream analyses, such as cell type annotation." Link
Tabula Sapiens
Tabula Sapiens
"Tabula Sapiens is a benchmark, first-draft human cell atlas of nearly 500,000 cells from 24 organs of 15 normal human subjects. This work is the product of the Tabula Sapiens Consortium."
"Tabula Sapiens is a benchmark, first-draft human cell atlas of nearly 500,000 cells from 24 organs of 15 normal human subjects. This work is the product of the Tabula Sapiens Consortium."
GTEx Portal
GTEx Portal
"The Adult Genotype Tissue Expression (GTEx) Project is a comprehensive public resource to study human gene expression and regulation, and its relationship to genetic variation across multiple diverse tissues and individuals. GTEx donor recruitment and molecular data generation are complete for core molecular assays including WGS, WES, and RNA-seq."
"The Adult Genotype Tissue Expression (GTEx) Project is a comprehensive public resource to study human gene expression and regulation, and its relationship to genetic variation across multiple diverse tissues and individuals. GTEx donor recruitment and molecular data generation are complete for core molecular assays including WGS, WES, and RNA-seq."
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