Marshall
Tyree S, Kim Y. (2025) Structural Analysis of a Metamorphic Protein Using AlphaFold2, bioRxiv 2024.11.04.621945; doi: https://doi.org/10.1101/2024.11.04.621945
Roytenberg R, Yue H, DeHart A, Kim E, Bai F, Kim Y, Denning K, Kwei A, Zhang Q, Liu J, Zheng X, Li W. (2024) Thymidine Phosphorylase Mediates SARS-CoV-2 Spike Protein Enhanced Thrombosis in K18-hACE2TG Mice, Thromb Res, 244, 109195
NJIT
Jang HI, Kim P, Kim YI. (2023) Damped oscillating phosphoryl transfer reaction in the cyanobacterial circadian clock, ACS Omega, 8, 10784-10788
Ai Y, Gunawardena H, Li X, Kim YI, Dewald H, Chen, H. (2022) Standard-Free Absolute Quantitation of Antibody Deamidation Degradation and Host Cell Proteins by Coulometric Mass Spectrometry. Anal Chem, 94, 12490-12499
Kim P, Thati N, Peshori, S, Jang HI, Kim YI. (2021) Shift in conformational equilibrium underlies the oscillatory phosphoryl transfer reaction in the circadian clock. Life, 11, 1058-1070
Kim P, Kim YI. (2021) An in vitro approach to elucidating clock-modulating metabolites. In: Johnson CH, Rust MJ (eds) Circadian rhythms in bacteria and microbiomes (pp. 203-220). Springer, Cham
Al-Amin A, Parvin F, Chakraborty J, Kim YI. (2021) Cyanobacteria Mediated Heavy Metal Removal: A Review on Mechanism, Biosynthesis, And Removal Capability. Environ Technol Rev, 10, 44-57
Kim P, Kaur M, Jang HI, Kim YI. (2020) Cyanobacterial circadian clock – a tool for survival. Life, 10, 365
Kim P, Kaszuba A, Jang HI, Kim YI. (2020) Purification of GST-fused cyanobacterial central oscillator protein KaiC. Appl Biochem Microbiol, 56, 395–399
Zhao P, Wang Q, Kaur M, Kim YI, Dewald HD, Mozziconacci O, Liu Y, Chen H. (2020) Absolute Quantitation of Proteins by Coulometric Mass Spectrometry. Anal Chem, 92, 7877-7883
Kim P, Porr B, Mori T, Yong-Sung Kim, Johnson C, Diekman C, Kim YI. (2020) CikA, an input pathway component, senses the oxidized quinone signal to generate phase delays in the cyanobacterial circadian clock. J Biol Rhythms, 35, 227-234
Jeong YM, Dias C, Diekman C, Brochon H, Kim P, Kaur M, Kim YS, Jang HI, Kim YI. (2019) Magnesium regulates the circadian oscillator in cyanobacteria. J Biol Rhythms, 34, 380-390.
Kaur M, Ng A, Kim P, Diekman C, Kim YI. (2019) CikA modulates the effect of KaiA on the period of the circadian oscillation in KaiC phosphorylation. J Biol Rhythms, 34, 218-223.
UC-San Diego
Chang YG, Cohen S, Phong C, Meyers WK, Kim YI, Tseng R, Lin J, Zhang L, Boyd J, Lee Y, Kang S, Lee D, Li S, Britt RD, Rust MJ, Golden SS, LiWang A. (2015) A protein fold switch joins the circadian oscillator to clock output in cyanobacteria. Science, 349, 324-328.
Kim YI, Boyd JS, Espinosa J, Golden SS. (2015) Detecting KaiC phosphorylation rhythms of the cyanobacterial circadian oscillator in vitro and in vivo. Method Enzymol. 551, 153-173.
Kim YI, Vinyard DJ, Ananyev G, Dismukes C, Golden SS. (2012) Oxidized quinones signal onset of darkness directly to the cyanobacterial circadian oscillator. Proc. Natl. Acad. Sci. U.S.A. 109, 17765-17769. (Inaugural article)
Dong G*, Kim YI*, Golden SS. (2010) Simplicity and complexity in the cyanobacterial circadian clock mechanism. Curr. Opin. Genet. Dev. 20, 619-625. (* Corresponding authors, Contributed equally to this work)
Wood TL*, Bridwell-Rabb J*, Kim YI*, Gao T, Chang YG, LiWang A, Barondeau DP, Golden SS. (2010) The KaiA protein of the cyanobacterial circadian oscillator is modulated by a redox-active cofactor. Proc. Natl. Acad. Sci. U.S.A. 107, 5804-5809. (* Contributed equally to this work)
Dong G, Yang Q, Wang Q, Kim YI, Wood TL, Osteryoung KW, van Oudenaarden A, Golden SS. (2010) Elevated ATPase activity of KaiC applies a circadian checkpoint on cell division in Synechococcus elongatus. Cell 140, 458-459.
Texas A&M
Chen Y, Kim YI, Mackey SR, Holtman CK, LiWang AC, Golden SS (2009) A novel allele of kaiA shortens circadian period and strengthens interaction of oscillator components in the cyanobacterium Synechococcus elongatus PCC 7942. J. Bacteriol. 191, 4392-4400.
Kim YI, Dong G, Carruthers CW Jr, Golden SS, LiWang AC (2008) The day/night switch in KaiC, a central oscillator component of the circadian clock of cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 105, 12825-12830.
Kim YI, Manalo MN, Perez LM, LiWang AC (2006) Computational and empirical trans-hydrogen bond deuterium isotope shifts suggest that N1–N3 A:U hydrogen bonds of RNA are shorter than those of A:T hydrogen bonds of DNA. J. Biomol. NMR 34, 229-236.