Github

Publications:

• Oscillatory Burst Detector Toolbox (Matlab)

Tool with algorithms to design detection of oscillatory bursts in LFP signals, including burst characterization, generation of ground truth, and using the latter to select optimal detection threshold in ROC for individual subjects. 

Documentation | Source

Tutorials:

• Lab tutorials for the course Computational Neuroscience

  • • Notebook version: Computational-Neuroscience-Tutorials

    • Colab version: Software_Tutorials_Colab

    • Biology labs: Leech-Action-Potential-Colab, EEG-alpha-waves-BCI

    • Course project: HCO-Model-Project-Colab

• Stylized-Single-Cell-and-Extracellular-Potential

Learning extracellular potential generated by a stylized single cell model.

Projects:

• Analyzing_Allen_Visual_Coding_Neuropixels_Dataset

Analyzing the public dataset Visual Coding – Neuropixels.

• Random_Recurrent_Network_model

Simulation of network models in Sompolinsky H, Crisanti A, Sommers HJ "Chaos in random neural networks" (1988), and Mastrogiuseppe F, Ostojic S. "Linking connectivity, dynamics, and computations in low-rank recurrent neural networks" (2018).

Slides

• stylized-single-cell

Converting detailed morphology of cell models in Allen Cell Types Database to stylized morphology.