Two-days on CAIMOD 

About the Event

This two-day event aims to disseminate the results of the CAIMOD project, as well as to promote and facilitate interaction with other disciplines. On the first day, introductory tutorials on specific omics data topics will be presented to Master's and PhD students, while the second day is reserved for talks by invited and keynote speakers and discussion of the main results obtained in the project. We welcome proposals for contributed posters, which are reserved for junior researchers and PhD students. 

Invited and Keynote Speakers

Registration

Registration is free of charge (but mandatory) for all participants.

During the registration you can also submit the title for the Poster Presentation. A confirmation for the poster acceptance will be given.

Fill here the registration form

Workshop Program

Thursday 11 December 2025

• 9:15 – 9:45: Registration

• 10:00 – 12:30: Tutorial: Fattorizzazioni low-rank su matrici di dati omici e clustering (part 1, 2); Speakers: Flavia Esposito, N. Del Buono, Università degli Studi di Bari Aldo Moro, Bari

• 12:30 – 14:30: Lunch break

• 14:30 – 17:00: Tutorial: Analisi della sopravvivenza mediante dati omici: dalla teoria alla pratica (parts 1, 2, 3); Speakers: Claudia Angelini (part 1), Francesca Calanca (part 3), Andrea Raiconi (part 2), Istituto per le Applicazioni del Calcolo "Mauro Picone" CNR, Napoli

Friday 12 December 2025

• 8:55 – 9:00: Registration 

• 9:00 – 9:05:  Welcome

• 9:05 – 09:55: Elisa Salviato, IRCCS Azienda USL di Reggio Emilia, Reggio Emilia, Italia
  Integrative views of gene regulation: from epigenomic and 3D chromatin topology to predictive modeling

• 10:00 – 10:25: Claudia Angelini, Istituto per le Applicazioni del Calcolo "Mauro Picone" CNR, Napoli
  Cooperative AFT models for multi-omics data integration

• 10:30 – 11:00: Coffee break

• 11:00 – 11:50:  Giulia Capitoli, Università di Milano-Bicocca, Milano, Italia
  Modeling Complex Spatial Multi-Omic Microenvironments with Graph Theory

• 11:50– 12:15: Nicoletta Del Buono, Università degli Studi di Bari Aldo Moro, Bari Italy,
  Multi-view joint Nonnegative Tri Factorization model for multi-omics data integration

• 12:15 – 12:40: Nicola Amoroso Università degli Studi di Bari Aldo Moro, Bari Italy
  Exponential random graph-based eXplainable Artificial Intelligence for brain connectivity 

• 12:40 – 13:05: Sabino Ciavarella, IRCCS - Istituto Tumori Bari Giovanni Paolo II, Bari
  From big data to models supporting diagnosis in onco-emathology

• 13:05 – 13:35: Poster Session

• 13:35 – 14:45: Light lunch

• 14:45 – 15:15: Poster Session

• 15:15:  Workshop closure

Poster Session

• Francesca Calanca, Istituto per le Applicazioni del Calcolo "Mauro Picone" CNR, Napoli
  Bridging Multi-omics Data and Survival Analysis with Omics2Surv

• Sharon Natasha Cox, Università degli Studi di Bari Aldo Moro, Bari, Italy
  MitSorter: a standalone tool for accurate discrimination of mtDNA and NUMT ONT reads based on differential methylation

• Serena Grazia de Benedictis, Università degli Studi di Bari Aldo Moro, Bari Italy
  Uncovering Lung Lesion Patterns in CT Scans through Topological Machine Learning

• Adriano Fonzino, Università degli Studi di Bari Aldo Moro, Bari, Italy
  NanoListener and NanoSpeech: ab initio detection of multiple epitranscriptomic modifications in ONT dRNA reads

• Grazia Gargano, IRCCS - Istituto Tumori Bari Giovanni Paolo II, Bari
  Differential gene expression analysis in RNA-Seq Data via Kullback-Liebler tri-NMF

• Emanuela Scafuri, Istituto per le Applicazioni del Calcolo "Mauro Picone" CNR, Napoli
  Multi-Omics Data Integration Approaches for Patient Stratification in Alzheimer’s Disease: from Raw Data to Insights

• Laura Selicato, Istituto di Ricerca sulle Acque IRSA-CNR, Bari
  Penalty hyperparameter optimization with diversity measure for nonnegative low-rank approximation

• Michelangelo Sofo, Dipartimento di Ingegneria dell’Informazione ed Elettrica e Matematica Applicata, Università degli Studi di Salerno,
  How medical named entity recognition techniques can support the nutritional biologist in his daily clinical practice? The evolution of symbiotic software DietAdhoc

Organizing and Scientific Committee

N. Del Buono, F. Esposito (Department of Mathematics)
C. Castiello, C. Mencar (Department of Computer Science)
University of Bari Aldo Moro, Italy