Resources

Resources

• Tumor IsomiR Encyclopedia

• sgRNA library DepMap

• mRNA splicing isoforms (vatdb)

• RNA2Drawer (Drawing secondary structure RNA)

• NUCPLOT (Analysis of RNA-protein interactions, installation tutorial)

• RNADreem (RNA chemical structure probing)

• RBP subcellular localization (ENCORE)

• PDBsum (Analysis of pdb files)

• POSTAR3 (Metadata of CLIP data for RBPs)

• PROTTER (Annotation protein sequence)

• Robetta (De novo protein folding)

• AlphaFold online course (EBI)

• FOLDSEEK  (Search based on structure similarity)

• Silent Mutator

• UCSC In-Silico PCR

• Sequence aligned (Expasy)

• gProfiler (GO terms)

• Bofill Lab annotated miRBase

• miRNA Tissue Atlas 

• isomiRdb (Saarland)

• DNA - Protein (AA/KDa) converter

• PAE Viewer

• Alpha Bridge 

• CRISPR editing db

PROTOCOLS

• Log in to Lab protocols

CODE

• https://github.com/Bofill-De-Ros-Lab

• https://macadmins.software/

Others

• Grant Writing 101