Publications
2024
S. Chakraborty and M. Biswas, "Insight into the Thermo-responsive Phase Behavior of P1 Region of α-Synuclein using Atomistic Simulations" (in preparation).
S. Pradhan and M. Biswas, "Using combination of metadynamics and umbrella sampling to explore GB1-dimerization pathway in crowders" (in preparation).
2023
S. Pradhan, R. Rath, and M. Biswas, "GB1 Dimerization in Crowders: A Multiple Resolution Approach", J. Chem. Inf. Model. 63 (5), 1570–1577 (2023).
A Tiwari, S Pradhan, A Sannigrahi, A K Mahakud, S Jha, K Chattopadhyay, M Biswas, M Saleem, "Interplay of lipid-head group and packing defects in driving Amyloid-beta mediated myelin-like model membrane deformation", J. Biol. Chem. 299 (5), 104653 (2023)
2021
S. K. Sahu and M. Biswas, "Modeling protein association from homogeneous to mixed environments: A reaction-diffusion dynamics approach", J Mol. Graph. Model. 107, 107936 (2021).
2018
M. Biswas, B. Lickert and G. Stock, “Metadynamics Enhanced Markov Modeling of Protein Dynamics” , J. Phys. Chem. B 122 (21), 5508-5514 (2018).
2016
N. Schaudinnus, B. Lickert, M. Biswas, G. Stock, “Global Langevin model of Multidimensional Biomolecular Dynamics”, J. Chem. Phys. 145, 184114 (2016).
2015
P. Mondal, M. Biswas*, T. Goldau, A. Heckel, I. Burghardt, “In Search of an Efficient Photoswitch for Functional RNA: Design Principles from a Microscopic Analysis of Azobenzene-linker-RNA Dynamics with Different Linkers”, J. Phys. Chem. B, 119 (34), 11275–11286 (2015). [corresponding author]
T. Goldau, K. Murayama, C. Brieke, S. Steinwand, P. Mondal, M. Biswas, I. Burghardt, J. Wachtveitl, H. Asanuma & A. Heckel, “Reversible Photoswitching of RNA Hybridization at Room Temperature with an Azobenzene C-nucleoside”, Chemistry - A European Journal 21 (7), 2845–2854 (2015).
2014
M. Biswas*, I. Burghardt, "Azobenzene Photoisomerization Induced Destabilization of B-DNA", Biophys. J. 107 (4), 932-940 (2014). (DOI)
D. Rastädter, M. Biswas, I. Burghardt, "Molecular Dynamics Study of the Controlled Destabilization of an RNA Hairpin Structure by a Covalently Attached Azobenzene Switch",J. Phys. Chem. B 118 (29), 8478–8488 (2014). (DOI)
2013
M. Biswas, J. Langowski and T. Bishop, "Atomistic simulation of nucleosomes", WIREs Computational Molecular Science 3 (4), 378-392 (2013). (DOI)
2012
M. Biswas, T. Wocjan, J. Langowski and J. C. Smith, “DNA Bending Potentials for Loop-Mediated Nucleosome Repositioning”, EPL(Europhysics Letters) 97, 38004 (2012). (DOI)
M. Biswas, J. Langowski and J. C. Smith, "Global Dynamics of Protein and DNA in Nucleosome Investigated by Molecular Dynamics Simulation", in From Computational Biophysics to Systems Biology (CBSB11) ed. by P. Carloni, U.H.E. Hansmann, T. Lippert, J.H. Meinke, S. Mohanty, W. Nadlar, O. Zimmermann, IAS Series, 8, 25-28 (2012).
2011
M. Biswas, K. Voltz, J. C. Smith and J. Langowski, “Role of Histone Tails in Structural Stability of the Nucleosome”, PloS Comput. Biol. 7 (12), e1002279 (2011). (DOI)
2010
S. G. Das, D. Pescia, M. Biswas, A. Sain, "Effect of hydrodynamic interaction on polymeric tethers", Phys. Rev. E 82, 041910 (2010) (highlighted by Nature-India). (DOI)