Dong-Yeon Nam, Je-Keun Rhee, Identifying microRNAs associated with tumor immunotherapy response using an interpretable machine learning model, Scientific Reports, 14:6172, 2024.

Je-Keun Rhee, Distinct cellular composition between normal surgical margins and tumor tissues in oral squamous cell carcinoma, Genes & Genomics, 45:763-369, 2023.

Dasol Hwang, Sojin Lee, Joonmyung Choi, Je-Keun Rhee, Hyunwoo J. Kim, Robust Auxiliary Learning with Weighting Function for Biased Data, Information Sciences, 628:307-319, 2023.

Juyeon Hong, Je-Keun Rhee, Genomic effect of DNA methylation on gene expression in colorectal cancer, Biology, 11(10): 1388, 2022.

Je-Keun Rhee, Pan-Cancer Analysis for Immune Cell Infiltration and Mutational Signatures Using Non-Negative Canonical Correlation Analysis, Applied Sciences, 12(13): 6596, 2022.

Dong-Yeon Nam, Je-Keun Rhee, Assessment of MicroRNAs Associated with Tumor Purity by Random Forest Regression, Biology, 11:787, 2022.

Bonil Koo, Je-Keun Rhee, Prediction of tumor purity from gene expression data using machine learning, Briefings in Bioinformatics, 22(6):bbab163, 2021.

Yeongjoo Kim, Ji Wan Kang, Junho Kang, Eun Jung Kwon, Mihyang Ha, Yoon Kyoung Kim, Hansong Lee, Je-Keun Rhee*, Yun Hak Kim*, Novel deep learning-based survival prediction for oral cancer by analyzing tumor-infiltrating lymphocyte profiles through CIBERSORT, OncoImmunology, 10(1):e1904573, 2021 (*Co-corresponding author)

Eun Hye Oh, Jin-Hong Shin, Jae Wook Cho, Seo Young Choi, Kwang-Dong Choi, Je-Keun Rhee, Jae-Hwan Choi. Episodic Vestibular Syndrome with Hyperventilation-Induced Downbeat Nystagmus. Cerebellum,  20(5):796-803, 2021.

J. Choi, J.-K. Rhee, H. Chae, Cell subtype classification via representation learning based on a denoising autoencoder for single-cell RNA sequencing. IEEE Access , 9: 14540-14548, 2021.

Eun Hye Oh*, Je-Keun Rhee*, Jin-Hong Shin, Jae Wook Cho, Dae-Seong Kim, Ji-Yun Park, Seo Young Choi, Kwang-Dong Choi, Jae-Hwan Choi, Neutrophil-mediated immune response as a possible mechanism of acute unilateral vestibulopathy, Journal of Vestibular Research, 30(6):363-374, 2020. (*Equally Contributed)

H. Lee, S. Jeong, Y. Yu, J. Kang, H. Sun, J.-K. Rhee, Y. H. Kim, Risk of metastatic pheochromocytoma and paraganglioma in SDHx mutation carriers: A systematic review and updated meta-analysis, Journal of Medical Genetics, 57(4):217-225, 2020.

Eun Hye Oh, Jin-Hong Shin, Hyang-Sook Kim, Seo-Young Choi, Kwang-Dong Choi, Je-Keun Rhee, Seowhang Lee, Changwook Lee, Jae-Hwan Choi, Rare variants of putative candidate genes associated with sporadic Meniere’s disease in East Asian population, Frontiers in Neurology, 10:1424, 2020.

Je-Keun Rhee, Jinseon Yoo, Kyu Ryung Kim, Jeeyoon Kim, Yong-Jae Lee, Byoung Chul Cho, and Tae-Min Kim, Identification of local clusters of mutation hotspots in cancer-related genes and their biological relevance, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16(5):1656-1662, 2019.

Joong Chae Na, Inbok Lee, Je-Keun Rhee*, and Soo-Yong Shin*, Fast single individual haplotyping method using GPGPU, Computers in Biology and Medicine, 113:103421, 2019.