The Biostar Handbook: A Beginner's Guide to Bioinformatics
The Biostar Handbook introduces readers to bioinformatics, the scientific discipline at the intersection of biology, computer science, and statistical data analytics that is dedicated to the digital processing of genomic information.
R
R: The R Project for Statistical Computing
R Studio: Open Source and enterprise-ready professional software for R
Bioconductor: Open Source Software for Bioinformatics
R for Data Science by Garrett Grolemund and Hadley Wickham
Hadley Wickham's page
Books
Bioinformatic Data Skills by Vince Buffalo
Automate the Boring Stuff with Python by Al Sweigart
Practical Computing for Biologists by Steven Haddock and Casey Dunn
Forum Resources
Biostars: bioinformatics explained
Bioconductor: open source software for bioinformatics
Nano with color
https://askubuntu.com/questions/90013/how-do-i-enable-syntax-highlighting-in-nano
UCI Resources
UCI Data Science Initiative
UCI Department of Statistics